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arXiv · 2607.28525

Same Graph Cross-Task Transfer in GNNs: Protocols and Predictors

Neelam Akula·Surbhi Kumar·Murat Kantarcioglu·Baris Coskunuzer
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Abstract

Many real-world graphs support multiple predictive tasks over the same underlying structure, creating an opportunity to reuse supervision across node classification (NC) and link prediction (LP). However, existing evaluations often rely on incompatible splits, observed-graph assumptions, and negative sampling rules, making conclusions about same-graph cross-task transfer unreliable. We formalize same-graph NC-LP transfer and propose a leakage-free protocol that fixes node and edge splits, uses a shared message-passing graph that excludes evaluated edges, and employs fixed negatives for LP. Across three backbones (GCN, GraphSAGE, GPS), we find that transfer is strongly directional and predictable: NC $\to$ LP is consistently beneficial on homophilic graphs, while LP $\to$ NC is fragile and can even degrade accuracy under naive representation reuse. LP $\to$ NC becomes reliably positive mainly in a structure-dominant regime where LP is easy but NC is unsaturated, suggesting that LP acts as structural pretraining. Finally, we introduce the CoTask Score (CTS) to summarize joint NC+LP utility when a shared encoder must serve both tasks, and show that simple dataset statistics, especially homophily, can guide mechanism choice and help avoid negative transfer.

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Neelam Akula, Surbhi Kumar, Murat Kantarcioglu, Baris Coskunuzer. 2026-07-30. Same Graph Cross-Task Transfer in GNNs: Protocols and Predictors. https://arxiv.org/abs/2607.28525

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