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arXiv · 2609.24736

MiTHras: Task-specific Hierarchical Semi-supervised Contrastive Masked Autoencoder for Mitotic Figure Analysis

Trinh T. L. Vuong·Simon Graham·Quoc Dang Vu·Phat T. H. Ho·Jeewoo Lim·Mostafa Jahanifar·Nasir Rajpoot·Jin T. Kwak
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Abstract

Mitotic figure (MF) analysis supports tumor grading and prognostic assessment, but automated models remain sensitive to differences in tissue type and image acquisition. We present MiTHras, a task-specific pretraining framework that combines pseudo-label-guided image- and token-level contrastive learning with masked reconstruction. We construct TCGA-MF-Pseudo, a corpus of 1.8 million cell-centered images from 14 TCGA cohorts spanning 11 organ sites. Comprehensive evaluation on MF classification, detection, count-based survival prediction, and subtype classification demonstrates the efficacy of MiTHras. It achieves the highest mean F1 on all three MF classification benchmarks and both subtype benchmarks. MiTHras also outperforms general-purpose and pathology foundation encoders by a larger margin under frozen-encoder linear probing than under full fine-tuning. Although detection gains are modest due to a shared candidate-detection stage, ablations confirm that token-level supervision improves typical-versus-atypical classification and linear probing. These findings establish that MiTHras yields robust, transferable representations for automated mitotic activity assessment.

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Trinh T. L. Vuong, Simon Graham, Quoc Dang Vu, Phat T. H. Ho, Jeewoo Lim, Mostafa Jahanifar, Nasir Rajpoot, Jin T. Kwak. 2026-09-21. MiTHras: Task-specific Hierarchical Semi-supervised Contrastive Masked Autoencoder for Mitotic Figure Analysis. https://arxiv.org/abs/2609.24736

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