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The Generalized Model of Polypeptide Chain Describing the Helix-Coil Transition in Biopolymers

Evgeni Sh. Mamasakhlisov·Artem V. Badasyan·Artyom V. Tsarukyan·Arsen V. Grigoryan·Vladimir F. Morozov
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Abstract

In this paper we summarize some results of our theoretical investigations of helix-coil transition both in single-strand (polypeptides) and two-strand (polynucleotides) macromolecules. The Hamiltonian does not contain any parameter designed especially for helix-coil transition and uses pure molecular microscopic parameters. To calculate averages we evaluate the partition function using transfer-matrix approach. The GMPC allowed to describe the influence of a number of factors, affecting the transition, basing on a unified microscopic approach. Thus we obtained, that solvents change transition temperature and interval in different ways, depending on type of solvent and on energy of solvent-macromolecule interaction; stacking on the background of H-bonding increases stability and decreases cooperativity of melting. For heterogeneous DNA we could analytically derive well known formulae for transition temperature and interval. In the framework of GMPC we calculate and show the difference of two order parameters of helix-coil transition - the helicity degree, and the average fraction of repeated units in helical conformation.

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Evgeni Sh. Mamasakhlisov, Artem V. Badasyan, Artyom V. Tsarukyan, Arsen V. Grigoryan, Vladimir F. Morozov. 2005-06-30. The Generalized Model of Polypeptide Chain Describing the Helix-Coil Transition in Biopolymers. https://arxiv.org/abs/cond-mat/0506791

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