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arXiv · cond-mat/9908108

Two State Behavior in a Solvable Model of $β$-hairpin folding

Chinlin Guo·Herbert Levine·David Kessler
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Abstract

Understanding the mechanism of protein secondary structure formation is an essential part of protein-folding puzzle. Here we describe a simple model for the formation of the $β$-hairpin, motivated by the fact that folding of a $β$-hairpin captures much of the basic physics of protein folding. We argue that the coupling of ``primary'' backbone stiffness and ``secondary'' contact formation (similar to the coupling between the ``secondary'' and ``tertiary'' structure in globular proteins), caused for example by side-chain packing regularities, is responsible for producing an all-or-none 2-state $β$-hairpin formation. We also develop a recursive relation to compute the phase diagram and single exponential folding/unfolding rate arising via a dominant transition state.

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Chinlin Guo, Herbert Levine, David Kessler. 1999-09-13. Two State Behavior in a Solvable Model of $β$-hairpin folding. https://doi.org/10.1103/physrevlett.84.3490

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