DNA Segmentation as A Model Selection Process

Wentian Li

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DNA Segmentation as A Model Selection Process

Wentian Li

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Abstract

Previous divide-and-conquer segmentation analyses of DNA sequences do not provide a satisfactory stopping criterion for the recursion. This paper proposes that segmentation be considered as a model selection process. Using the tools in model selection, a limit for the stopping criterion on the relaxed end can be determined. The Bayesian information criterion, in particular, provides a much more stringent stopping criterion than what is currently used. Such a stringent criterion can be used to delineate larger DNA domains. A relationship between the stopping criterion and the average domain size is empirically determined, which may aid in the determination of isochore borders.

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Wentian Li. 2001-04-05. DNA Segmentation as A Model Selection Process. https://arxiv.org/abs/physics/0104027

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