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Weighted-Codon-Usage Based Phylogeny In Ectocarpales

Smarajit Das·Jayprokas Chakrabarti·Zhumur Ghosh·Satyabrata Sahoo·Bibekanand Mallick
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Abstract

We analyse forty seven chloroplastid genes of the large subunit of RuBisCO, from the Algal order Ectocarpales, sourced from GenBank. Codon-usage weighted by the nucleotide base bias defines our score called the Codon-Impact-Parameter. This score is used to obtain phylogenetic relations amongst the 47 Ectocarpales. We compare our classification with the ones done earlier.

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Smarajit Das, Jayprokas Chakrabarti, Zhumur Ghosh, Satyabrata Sahoo, Bibekanand Mallick. 2005-06-06. Weighted-Codon-Usage Based Phylogeny In Ectocarpales. https://arxiv.org/abs/q-bio/0506003

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