Optimal experimental design in an EGFR signaling and down-regulation model

Fergal P. Casey; Dan Baird; Qiyu Feng; Ryan N. Gutenkunst; Joshua J. Waterfall; Christopher R. Myers; Kevin S. Brown; Richard A. Cerione; James P. Sethna

arXiv · q-bio/0610024

Optimal experimental design in an EGFR signaling and down-regulation model

Fergal P. Casey·Dan Baird·Qiyu Feng·Ryan N. Gutenkunst·Joshua J. Waterfall·Christopher R. Myers·Kevin S. Brown·Richard A. Cerione·James P. Sethna

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Abstract

We apply the methods of optimal experimental design to a differential equation model for epidermal growth factor receptor (EGFR) signaling, trafficking, and down-regulation. The model incorporates the role of a recently discovered protein complex made up of the E3 ubiquitin ligase, Cbl, the guanine exchange factor (GEF), Cool-1 (Beta-Pix), and the Rho family G protein Cdc42. The complex has been suggested to be important in disrupting receptor down-regulation. We demonstrate that the model interactions can accurately reproduce the experimental observations, that they can be used to make predictions with accompanying uncertainties, and that we can apply ideas of optimal experimental design to suggest new experiments that reduce the uncertainty on unmeasurable components of the system.

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Fergal P. Casey, Dan Baird, Qiyu Feng, Ryan N. Gutenkunst, Joshua J. Waterfall, Christopher R. Myers, Kevin S. Brown, Richard A. Cerione, James P. Sethna. 2006-10-12. Optimal experimental design in an EGFR signaling and down-regulation model. https://arxiv.org/abs/q-bio/0610024

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