arXiv subjects

A. Emilie J. Wedenborg

Publications and source records attributed to A. Emilie J. Wedenborg.

3 recordsLinked to original sources

arXiv2026

The Polytopal Neural Network

Understanding how deep neural networks process information remains a central challenge. Existing interpretability methods often compromise structural fidelity, rely on prespecified corpora, or explain models post-hoc. We propose Polytopal Neural Networks (PNNs), a framework that extracts distinct layer-wise aspects by enforcing a polytope-based structure that is used directly in subsequent information processing. We scale our approach using learned corpus representations and an amortized simplex inference procedure and highlight how the framework also gives a direct route to vector quantized (VQ) training. In PNNs, observations are explicitly described by their alignment with layer-specific aspects. Empirical results show that imposing polytopal constraints on neural network representations preserves meaningful structures in the latent space with minimal degradation in performance, favorable compressed representations when compared to VQ representations in unsupervised learning, while also providing a performant new approach to VQ deep learning training. Our findings suggest that deep networks can enforce interpretable polytope-based representations, offering a principled path toward more transparent AI systems with minimal performance compromise.

cs.LG↗

arXiv2026

Efficient and Generalizable Archetypal Analysis for Discrete Data

Archetypal Analysis (AA) represents observations as convex combinations of extremal data-driven profiles, yielding interpretable low-dimensional descriptions of complex datasets. Classical AA relies on a least-squares objective, which is poorly suited to discrete observations such as binary, count, and categorical data. We introduce an efficient likelihood-based framework for AA supporting Bernoulli, Poisson, and multinomial observation models. Our optimization scheme employs local quadratic approximations of the negative log-likelihood, enabling constrained updates through sequential minimal optimization (SMO) and an active-set method. Scalability is improved by bounding the active set while preserving simplex feasibility. We further introduce a cross-validated predictive likelihood criterion for selecting the number of archetypes, providing a principled alternative to reconstruction-error heuristics and stability-based diagnostics. Synthetic experiments demonstrate computational efficiency and accurate recovery of model complexity. Applications to single-cell RNA sequencing, microbiome composition, and somatic mutation data show that the learned archetypes capture interpretable domain-specific structures while achieving competitive likelihood fits and stable solutions. Overall, the proposed framework enables efficient likelihood-based archetypal analysis of discrete data, complemented by predictive likelihood-based model selection.

stat.ML↗

arXiv2025

Archetypal Analysis for Binary Data

Archetypal analysis (AA) is a matrix decomposition method that identifies distinct patterns using convex combinations of the data points denoted archetypes with each data point in turn reconstructed as convex combinations of the archetypes. AA thereby forms a polytope representing trade-offs of the distinct aspects in the data. Most existing methods for AA are designed for continuous data and do not exploit the structure of the data distribution. In this paper, we propose two new optimization frameworks for archetypal analysis for binary data. i) A second order approximation of the AA likelihood based on the Bernoulli distribution with efficient closed-form updates using an active set procedure for learning the convex combinations defining the archetypes, and a sequential minimal optimization strategy for learning the observation specific reconstructions. ii) A Bernoulli likelihood based version of the principal convex hull analysis (PCHA) algorithm originally developed for least squares optimization. We compare these approaches with the only existing binary AA procedure relying on multiplicative updates and demonstrate their superiority on both synthetic and real binary data. Notably, the proposed optimization frameworks for AA can easily be extended to other data distributions providing generic efficient optimization frameworks for AA based on tailored likelihood functions reflecting the underlying data distribution.

cs.LG↗