arXiv subjects

Abbas Khosravi

Publications and source records attributed to Abbas Khosravi.

At least 37 records · Page 2Linked to original sources

arXiv2022

Automatic autism spectrum disorder detection using artificial intelligence methods with MRI neuroimaging: A review

Autism spectrum disorder (ASD) is a brain condition characterized by diverse signs and symptoms that appear in early childhood. ASD is also associated with communication deficits and repetitive behavior in affected individuals. Various ASD detection methods have been developed, including neuroimaging modalities and psychological tests. Among these methods, magnetic resonance imaging (MRI) imaging modalities are of paramount importance to physicians. Clinicians rely on MRI modalities to diagnose ASD accurately. The MRI modalities are non-invasive methods that include functional (fMRI) and structural (sMRI) neuroimaging methods. However, diagnosing ASD with fMRI and sMRI for specialists is often laborious and time-consuming; therefore, several computer-aided design systems (CADS) based on artificial intelligence (AI) have been developed to assist specialist physicians. Conventional machine learning (ML) and deep learning (DL) are the most popular schemes of AI used for diagnosing ASD. This study aims to review the automated detection of ASD using AI. We review several CADS that have been developed using ML techniques for the automated diagnosis of ASD using MRI modalities. There has been very limited work on the use of DL techniques to develop automated diagnostic models for ASD. A summary of the studies developed using DL is provided in the Supplementary Appendix. Then, the challenges encountered during the automated diagnosis of ASD using MRI and AI techniques are described in detail. Additionally, a graphical comparison of studies using ML and DL to diagnose ASD automatically is discussed. We suggest future approaches to detecting ASDs using AI techniques and MRI neuroimaging.

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arXiv2022

An overview of deep learning techniques for epileptic seizures detection and prediction based on neuroimaging modalities: Methods, challenges, and future works

Epilepsy is a disorder of the brain denoted by frequent seizures. The symptoms of seizure include confusion, abnormal staring, and rapid, sudden, and uncontrollable hand movements. Epileptic seizure detection methods involve neurological exams, blood tests, neuropsychological tests, and neuroimaging modalities. Among these, neuroimaging modalities have received considerable attention from specialist physicians. One method to facilitate the accurate and fast diagnosis of epileptic seizures is to employ computer-aided diagnosis systems (CADS) based on deep learning (DL) and neuroimaging modalities. This paper has studied a comprehensive overview of DL methods employed for epileptic seizures detection and prediction using neuroimaging modalities. First, DL-based CADS for epileptic seizures detection and prediction using neuroimaging modalities are discussed. Also, descriptions of various datasets, preprocessing algorithms, and DL models which have been used for epileptic seizures detection and prediction have been included. Then, research on rehabilitation tools has been presented, which contains brain-computer interface (BCI), cloud computing, internet of things (IoT), hardware implementation of DL techniques on field-programmable gate array (FPGA), etc. In the discussion section, a comparison has been carried out between research on epileptic seizure detection and prediction. The challenges in epileptic seizures detection and prediction using neuroimaging modalities and DL models have been described. In addition, possible directions for future works in this field, specifically for solving challenges in datasets, DL, rehabilitation, and hardware models, have been proposed. The final section is dedicated to the conclusion which summarizes the significant findings of the paper.

cs.LG↗

arXiv2022

Comparison Study of Inertial Sensor Signal Combination for Human Activity Recognition based on Convolutional Neural Networks

Human Activity Recognition (HAR) is one of the essential building blocks of so many applications like security, monitoring, the internet of things and human-robot interaction. The research community has developed various methodologies to detect human activity based on various input types. However, most of the research in the field has been focused on applications other than human-in-the-centre applications. This paper focused on optimising the input signals to maximise the HAR performance from wearable sensors. A model based on Convolutional Neural Networks (CNN) has been proposed and trained on different signal combinations of three Inertial Measurement Units (IMU) that exhibit the movements of the dominant hand, leg and chest of the subject. The results demonstrate k-fold cross-validation accuracy between 99.77 and 99.98% for signals with the modality of 12 or higher. The performance of lower dimension signals, except signals containing information from both chest and ankle, was far inferior, showing between 73 and 85% accuracy.

cs.HC↗

arXiv2022

Human Activity Recognition from Knee Angle Using Machine Learning Techniques

Human Activity Recognition (HAR) is a crucial technology for many applications such as smart homes, surveillance, human assistance and health care. This technology utilises pattern recognition and can contribute to the development of human-in-the-loop control of different systems such as orthoses and exoskeletons. The majority of reported studies use a small dataset collected from an experiment for a specific purpose. The downsides of this approach include: 1) it is hard to generalise the outcome to different people with different biomechanical characteristics and health conditions, and 2) it cannot be implemented in applications other than the original experiment. To address these deficiencies, the current study investigates using a publicly available dataset collected for pathology diagnosis purposes to train Machine Learning (ML) algorithms. A dataset containing knee motion of participants performing different exercises has been used to classify human activity. The algorithms used in this study are Gaussian Naive Bayes, Decision Tree, Random Forest, K-Nearest Neighbors Vote, Support Vector Machine and Gradient Boosting. Furthermore, two training approaches are compared to raw data (de-noised) and manually extracted features. The results show up to 0.94 performance of the Area Under the ROC Curve (AUC) metric for 11-fold cross-validation for Gradient Boosting algorithm using raw data. This outcome reflects the validity and potential use of the proposed approach for this type of dataset.

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arXiv2022

Controlled Dropout for Uncertainty Estimation

Uncertainty quantification in a neural network is one of the most discussed topics for safety-critical applications. Though Neural Networks (NNs) have achieved state-of-the-art performance for many applications, they still provide unreliable point predictions, which lack information about uncertainty estimates. Among various methods to enable neural networks to estimate uncertainty, Monte Carlo (MC) dropout has gained much popularity in a short period due to its simplicity. In this study, we present a new version of the traditional dropout layer where we are able to fix the number of dropout configurations. As such, each layer can take and apply the new dropout layer in the MC method to quantify the uncertainty associated with NN predictions. We conduct experiments on both toy and realistic datasets and compare the results with the MC method using the traditional dropout layer. Performance analysis utilizing uncertainty evaluation metrics corroborates that our dropout layer offers better performance in most cases.

cs.LG↗

arXiv2022

UncertaintyFuseNet: Robust Uncertainty-aware Hierarchical Feature Fusion Model with Ensemble Monte Carlo Dropout for COVID-19 Detection

The COVID-19 (Coronavirus disease 2019) pandemic has become a major global threat to human health and well-being. Thus, the development of computer-aided detection (CAD) systems that are capable to accurately distinguish COVID-19 from other diseases using chest computed tomography (CT) and X-ray data is of immediate priority. Such automatic systems are usually based on traditional machine learning or deep learning methods. Differently from most of existing studies, which used either CT scan or X-ray images in COVID-19-case classification, we present a simple but efficient deep learning feature fusion model, called UncertaintyFuseNet, which is able to classify accurately large datasets of both of these types of images. We argue that the uncertainty of the model's predictions should be taken into account in the learning process, even though most of existing studies have overlooked it. We quantify the prediction uncertainty in our feature fusion model using effective Ensemble MC Dropout (EMCD) technique. A comprehensive simulation study has been conducted to compare the results of our new model to the existing approaches, evaluating the performance of competing models in terms of Precision, Recall, F-Measure, Accuracy and ROC curves. The obtained results prove the efficiency of our model which provided the prediction accuracy of 99.08\% and 96.35\% for the considered CT scan and X-ray datasets, respectively. Moreover, our UncertaintyFuseNet model was generally robust to noise and performed well with previously unseen data. The source code of our implementation is freely available at: https://github.com/moloud1987/UncertaintyFuseNet-for-COVID-19-Classification.

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arXiv2022

DoubleU-Net++: Architecture with Exploit Multiscale Features for Vertebrae Segmentation

Accurate segmentation of the vertebra is an important prerequisite in various medical applications (E.g. tele surgery) to assist surgeons. Following the successful development of deep neural networks, recent studies have focused on the essential rule of vertebral segmentation. Prior works contain a large number of parameters, and their segmentation is restricted to only one view. Inspired by DoubleU-Net, we propose a novel model named DoubleU-Net++ in which DensNet as feature extractor, special attention module from Convolutional Block Attention on Module (CBAM) and, Pyramid Squeeze Attention (PSA) module are employed to improve extracted features. We evaluate our proposed model on three different views (sagittal, coronal, and axial) of VerSe2020 and xVertSeg datasets. Compared with state-of-the-art studies, our architecture is trained faster and achieves higher precision, recall, and F1-score as evaluation (imporoved by 4-6%) and the result of above 94% for sagittal view and above 94% for both coronal view and above 93% axial view were gained for VerSe2020 dataset, respectively. Also, for xVertSeg dataset, we achieved precision, recall,and F1-score of above 97% for sagittal view, above 93% for coronal view ,and above 96% for axial view.

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arXiv2022

SpinalNet: Deep Neural Network with Gradual Input

Deep neural networks (DNNs) have achieved the state of the art performance in numerous fields. However, DNNs need high computation times, and people always expect better performance in a lower computation. Therefore, we study the human somatosensory system and design a neural network (SpinalNet) to achieve higher accuracy with fewer computations. Hidden layers in traditional NNs receive inputs in the previous layer, apply activation function, and then transfer the outcomes to the next layer. In the proposed SpinalNet, each layer is split into three splits: 1) input split, 2) intermediate split, and 3) output split. Input split of each layer receives a part of the inputs. The intermediate split of each layer receives outputs of the intermediate split of the previous layer and outputs of the input split of the current layer. The number of incoming weights becomes significantly lower than traditional DNNs. The SpinalNet can also be used as the fully connected or classification layer of DNN and supports both traditional learning and transfer learning. We observe significant error reductions with lower computational costs in most of the DNNs. Traditional learning on the VGG-5 network with SpinalNet classification layers provided the state-of-the-art (SOTA) performance on QMNIST, Kuzushiji-MNIST, EMNIST (Letters, Digits, and Balanced) datasets. Traditional learning with ImageNet pre-trained initial weights and SpinalNet classification layers provided the SOTA performance on STL-10, Fruits 360, Bird225, and Caltech-101 datasets. The scripts of the proposed SpinalNet are available at the following link: https://github.com/dipuk0506/SpinalNet

cs.CV↗

arXiv2021

Time series forecasting of new cases and new deaths rate for COVID-19 using deep learning methods

The first known case of Coronavirus disease 2019 (COVID-19) was identified in December 2019. It has spread worldwide, leading to an ongoing pandemic, imposed restrictions and costs to many countries. Predicting the number of new cases and deaths during this period can be a useful step in predicting the costs and facilities required in the future. The purpose of this study is to predict new cases and deaths rate one, three and seven-day ahead during the next 100 days. The motivation for predicting every n days (instead of just every day) is the investigation of the possibility of computational cost reduction and still achieving reasonable performance. Such a scenario may be encountered in real-time forecasting of time series. Six different deep learning methods are examined on the data adopted from the WHO website. Three methods are LSTM, Convolutional LSTM, and GRU. The bidirectional extension is then considered for each method to forecast the rate of new cases and new deaths in Australia and Iran countries. This study is novel as it carries out a comprehensive evaluation of the aforementioned three deep learning methods and their bidirectional extensions to perform prediction on COVID-19 new cases and new death rate time series. To the best of our knowledge, this is the first time that Bi-GRU and Bi-Conv-LSTM models are used for prediction on COVID-19 new cases and new deaths time series. The evaluation of the methods is presented in the form of graphs and Friedman statistical test. The results show that the bidirectional models have lower errors than other models. A several error evaluation metrics are presented to compare all models, and finally, the superiority of bidirectional methods is determined. This research could be useful for organisations working against COVID-19 and determining their long-term plans.

cs.LG↗

arXiv2021

Uncertainty-Aware Semi-Supervised Method Using Large Unlabeled and Limited Labeled COVID-19 Data

The new coronavirus has caused more than one million deaths and continues to spread rapidly. This virus targets the lungs, causing respiratory distress which can be mild or severe. The X-ray or computed tomography (CT) images of lungs can reveal whether the patient is infected with COVID-19 or not. Many researchers are trying to improve COVID-19 detection using artificial intelligence. Our motivation is to develop an automatic method that can cope with scenarios in which preparing labeled data is time consuming or expensive. In this article, we propose a Semi-supervised Classification using Limited Labeled Data (SCLLD) relying on Sobel edge detection and Generative Adversarial Networks (GANs) to automate the COVID-19 diagnosis. The GAN discriminator output is a probabilistic value which is used for classification in this work. The proposed system is trained using 10,000 CT scans collected from Omid Hospital, whereas a public dataset is also used for validating our system. The proposed method is compared with other state-of-the-art supervised methods such as Gaussian processes. To the best of our knowledge, this is the first time a semi-supervised method for COVID-19 detection is presented. Our system is capable of learning from a mixture of limited labeled and unlabeled data where supervised learners fail due to a lack of sufficient amount of labeled data. Thus, our semi-supervised training method significantly outperforms the supervised training of Convolutional Neural Network (CNN) when labeled training data is scarce. The 95% confidence intervals for our method in terms of accuracy, sensitivity, and specificity are 99.56 +- 0.20%, 99.88 +- 0.24%, and 99.40 +- 0.18%, respectively, whereas intervals for the CNN (trained supervised) are 68.34 +- 4.11%, 91.2 +- 6.15%, and 46.40 +- 5.21%.

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arXiv2021

Detection of Epileptic Seizures on EEG Signals Using ANFIS Classifier, Autoencoders and Fuzzy Entropies

Epileptic seizures are one of the most crucial neurological disorders, and their early diagnosis will help the clinicians to provide accurate treatment for the patients. The electroencephalogram (EEG) signals are widely used for epileptic seizures detection, which provides specialists with substantial information about the functioning of the brain. In this paper, a novel diagnostic procedure using fuzzy theory and deep learning techniques is introduced. The proposed method is evaluated on the Bonn University dataset with six classification combinations and also on the Freiburg dataset. The tunable-Q wavelet transform (TQWT) is employed to decompose the EEG signals into different sub-bands. In the feature extraction step, 13 different fuzzy entropies are calculated from different sub-bands of TQWT, and their computational complexities are calculated to help researchers choose the best set for various tasks. In the following, an autoencoder (AE) with six layers is employed for dimensionality reduction. Finally, the standard adaptive neuro-fuzzy inference system (ANFIS), and also its variants with grasshopper optimization algorithm (ANFIS-GOA), particle swarm optimization (ANFIS-PSO), and breeding swarm optimization (ANFIS-BS) methods are used for classification. Using our proposed method, ANFIS-BS method has obtained an accuracy of 99.74% in classifying into two classes and an accuracy of 99.46% in ternary classification on the Bonn dataset and 99.28% on the Freiburg dataset, reaching state-of-the-art performances on both of them.

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arXiv2021

Deep Learning for Neuroimaging-based Diagnosis and Rehabilitation of Autism Spectrum Disorder: A Review

Accurate diagnosis of Autism Spectrum Disorder (ASD) followed by effective rehabilitation is essential for the management of this disorder. Artificial intelligence (AI) techniques can aid physicians to apply automatic diagnosis and rehabilitation procedures. AI techniques comprise traditional machine learning (ML) approaches and deep learning (DL) techniques. Conventional ML methods employ various feature extraction and classification techniques, but in DL, the process of feature extraction and classification is accomplished intelligently and integrally. DL methods for diagnosis of ASD have been focused on neuroimaging-based approaches. Neuroimaging techniques are non-invasive disease markers potentially useful for ASD diagnosis. Structural and functional neuroimaging techniques provide physicians substantial information about the structure (anatomy and structural connectivity) and function (activity and functional connectivity) of the brain. Due to the intricate structure and function of the brain, proposing optimum procedures for ASD diagnosis with neuroimaging data without exploiting powerful AI techniques like DL may be challenging. In this paper, studies conducted with the aid of DL networks to distinguish ASD are investigated. Rehabilitation tools provided for supporting ASD patients utilizing DL networks are also assessed. Finally, we will present important challenges in the automated detection and rehabilitation of ASD and propose some future works.

cs.LG↗

arXiv2021

A Comprehensive Study on Torchvision Pre-trained Models for Fine-grained Inter-species Classification

This study aims to explore different pre-trained models offered in the Torchvision package which is available in the PyTorch library. And investigate their effectiveness on fine-grained images classification. Transfer Learning is an effective method of achieving extremely good performance with insufficient training data. In many real-world situations, people cannot collect sufficient data required to train a deep neural network model efficiently. Transfer Learning models are pre-trained on a large data set, and can bring a good performance on smaller datasets with significantly lower training time. Torchvision package offers us many models to apply the Transfer Learning on smaller datasets. Therefore, researchers may need a guideline for the selection of a good model. We investigate Torchvision pre-trained models on four different data sets: 10 Monkey Species, 225 Bird Species, Fruits 360, and Oxford 102 Flowers. These data sets have images of different resolutions, class numbers, and different achievable accuracies. We also apply their usual fully-connected layer and the Spinal fully-connected layer to investigate the effectiveness of SpinalNet. The Spinal fully-connected layer brings better performance in most situations. We apply the same augmentation for different models for the same data set for a fair comparison. This paper may help future Computer Vision researchers in choosing a proper Transfer Learning model.

cs.CV↗

arXiv2021

Accurate Prediction Using Triangular Type-2 Fuzzy Linear Regression

Many works have been done to handle the uncertainties in the data using type 1 fuzzy regression. Few type 2 fuzzy regression works used interval type 2 for indeterminate modeling using type 1 fuzzy membership. The current survey proposes a triangular type-2 fuzzy regression (TT2FR) model to ameliorate the efficiency of the model by handling the uncertainty in the data. The triangular secondary membership function is used instead of widely used interval type models. In the proposed model, vagueness in primary and secondary fuzzy sets is minimized and also, a specified x-plane of observed value is included in the same α- plane of the predicted value. Complex calculations of the type-2 fuzzy (T2F) model are simplified by reducing three dimensional type-2 fuzzy set (3DT2FS) into two dimensional interval type-2 fuzzy (2DIT2F) models. The current survey presents a new regression model of T2F by considering the more general form of T2F membership functions and thus avoids high complexity. The performance of the developed model is evaluated using the TAIEX and COVID-19 forecasting datasets. Our developed model reached the highest performance as compared to the other state-of-art techniques. Our developed method is ready to be tested with more uncertain data and has the potential to use to predict the weather and stock prediction.

cs.LG↗

arXiv2021

MCUa: Multi-level Context and Uncertainty aware Dynamic Deep Ensemble for Breast Cancer Histology Image Classification

Breast histology image classification is a crucial step in the early diagnosis of breast cancer. In breast pathological diagnosis, Convolutional Neural Networks (CNNs) have demonstrated great success using digitized histology slides. However, tissue classification is still challenging due to the high visual variability of the large-sized digitized samples and the lack of contextual information. In this paper, we propose a novel CNN, called Multi-level Context and Uncertainty aware (MCUa) dynamic deep learning ensemble model.MCUamodel consists of several multi-level context-aware models to learn the spatial dependency between image patches in a layer-wise fashion. It exploits the high sensitivity to the multi-level contextual information using an uncertainty quantification component to accomplish a novel dynamic ensemble model.MCUamodelhas achieved a high accuracy of 98.11% on a breast cancer histology image dataset. Experimental results show the superior effectiveness of the proposed solution compared to the state-of-the-art histology classification models.

cs.CV↗

arXiv2021

Combining a Convolutional Neural Network with Autoencoders to Predict the Survival Chance of COVID-19 Patients

COVID-19 has caused many deaths worldwide. The automation of the diagnosis of this virus is highly desired. Convolutional neural networks (CNNs) have shown outstanding classification performance on image datasets. To date, it appears that COVID computer-aided diagnosis systems based on CNNs and clinical information have not yet been analysed or explored. We propose a novel method, named the CNN-AE, to predict the survival chance of COVID-19 patients using a CNN trained with clinical information. Notably, the required resources to prepare CT images are expensive and limited compared to those required to collect clinical data, such as blood pressure, liver disease, etc. We evaluated our method using a publicly available clinical dataset that we collected. The dataset properties were carefully analysed to extract important features and compute the correlations of features. A data augmentation procedure based on autoencoders (AEs) was proposed to balance the dataset. The experimental results revealed that the average accuracy of the CNN-AE (96.05%) was higher than that of the CNN (92.49%). To demonstrate the generality of our augmentation method, we trained some existing mortality risk prediction methods on our dataset (with and without data augmentation) and compared their performances. We also evaluated our method using another dataset for further generality verification. To show that clinical data can be used for COVID-19 survival chance prediction, the CNN-AE was compared with multiple pre-trained deep models that were tuned based on CT images.

cs.CV↗

arXiv2021

Uncertainty-Aware Credit Card Fraud Detection Using Deep Learning

Countless research works of deep neural networks (DNNs) in the task of credit card fraud detection have focused on improving the accuracy of point predictions and mitigating unwanted biases by building different network architectures or learning models. Quantifying uncertainty accompanied by point estimation is essential because it mitigates model unfairness and permits practitioners to develop trustworthy systems which abstain from suboptimal decisions due to low confidence. Explicitly, assessing uncertainties associated with DNNs predictions is critical in real-world card fraud detection settings for characteristic reasons, including (a) fraudsters constantly change their strategies, and accordingly, DNNs encounter observations that are not generated by the same process as the training distribution, (b) owing to the time-consuming process, very few transactions are timely checked by professional experts to update DNNs. Therefore, this study proposes three uncertainty quantification (UQ) techniques named Monte Carlo dropout, ensemble, and ensemble Monte Carlo dropout for card fraud detection applied on transaction data. Moreover, to evaluate the predictive uncertainty estimates, UQ confusion matrix and several performance metrics are utilized. Through experimental results, we show that the ensemble is more effective in capturing uncertainty corresponding to generated predictions. Additionally, we demonstrate that the proposed UQ methods provide extra insight to the point predictions, leading to elevate the fraud prevention process.

cs.LG↗

arXiv2021

Confidence Aware Neural Networks for Skin Cancer Detection

Deep learning (DL) models have received particular attention in medical imaging due to their promising pattern recognition capabilities. However, Deep Neural Networks (DNNs) require a huge amount of data, and because of the lack of sufficient data in this field, transfer learning can be a great solution. DNNs used for disease diagnosis meticulously concentrate on improving the accuracy of predictions without providing a figure about their confidence of predictions. Knowing how much a DNN model is confident in a computer-aided diagnosis model is necessary for gaining clinicians' confidence and trust in DL-based solutions. To address this issue, this work presents three different methods for quantifying uncertainties for skin cancer detection from images. It also comprehensively evaluates and compares performance of these DNNs using novel uncertainty-related metrics. The obtained results reveal that the predictive uncertainty estimation methods are capable of flagging risky and erroneous predictions with a high uncertainty estimate. We also demonstrate that ensemble approaches are more reliable in capturing uncertainties through inference.

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