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Abdullah-Al-Mamun

Publications and source records attributed to Abdullah-Al-Mamun.

2 recordsLinked to original sources

The "AI+R"-tree: An Instance-optimized R-tree

The emerging class of instance-optimized systems has shown potential to achieve high performance by specializing to a specific data and query workloads. Particularly, Machine Learning (ML) techniques have been applied successfully to build various instance-optimized components (e.g., learned indexes). This paper investigates to leverage ML techniques to enhance the performance of spatial indexes, particularly the R-tree, for a given data and query workloads. As the areas covered by the R-tree index nodes overlap in space, upon searching for a specific point in space, multiple paths from root to leaf may potentially be explored. In the worst case, the entire R-tree could be searched. In this paper, we define and use the overlap ratio to quantify the degree of extraneous leaf node accesses required by a range query. The goal is to enhance the query performance of a traditional R-tree for high-overlap range queries as they tend to incur long running-times. We introduce a new AI-tree that transforms the search operation of an R-tree into a multi-label classification task to exclude the extraneous leaf node accesses. Then, we augment a traditional R-tree to the AI-tree to form a hybrid "AI+R"-tree. The "AI+R"-tree can automatically differentiate between the high- and low-overlap queries using a learned model. Thus, the "AI+R"-tree processes high-overlap queries using the AI-tree, and the low-overlap queries using the R-tree. Experiments on real datasets demonstrate that the "AI+R"-tree can enhance the query performance over a traditional R-tree by up to 500%.

cs.DB

A more appropriate Protein Classification using Data Mining

Research in bioinformatics is a complex phenomenon as it overlaps two knowledge domains, namely, biological and computer sciences. This paper has tried to introduce an efficient data mining approach for classifying proteins into some useful groups by representing them in hierarchy tree structure. There are several techniques used to classify proteins but most of them had few drawbacks on their grouping. Among them the most efficient grouping technique is used by PSIMAP. Even though PSIMAP (Protein Structural Interactome Map) technique was successful to incorporate most of the protein but it fails to classify the scale free property proteins. Our technique overcomes this drawback and successfully maps all the protein in different groups, including the scale free property proteins failed to group by PSIMAP. Our approach selects the six major attributes of protein: a) Structure comparison b) Sequence Comparison c) Connectivity d) Cluster Index e) Interactivity f) Taxonomic to group the protein from the databank by generating a hierarchal tree structure. The proposed approach calculates the degree (probability) of similarity of each protein newly entered in the system against of existing proteins in the system by using probability theorem on each six properties of proteins.

cs.CE