arXiv subjects

Abhinav K. Jha

Publications and source records attributed to Abhinav K. Jha.

43 records · Page 3Linked to original sources

arXiv2021

A physics and learning-based transmission-less attenuation compensation method for SPECT

Attenuation compensation (AC) is a pre-requisite for reliable quantification and beneficial for visual interpretation tasks in single-photon emission computed tomography (SPECT). Typical AC methods require the availability of an attenuation map obtained using a transmission scan, such as a CT scan. This has several disadvantages such as increased radiation dose, higher costs, and possible misalignment between SPECT and CT scans. Also, often a CT scan is unavailable. In this context, we and others are showing that scattered photons in SPECT contain information to estimate the attenuation distribution. To exploit this observation, we propose a physics and learning-based method that uses the SPECT emission data in the photopeak and scatter windows to perform transmission-less AC in SPECT. The proposed method uses data acquired in the scatter window to reconstruct an initial estimate of the attenuation map using a physics-based approach. A convolutional neural network is then trained to segment this initial estimate into different regions. Pre-defined attenuation coefficients are assigned to these regions, yielding the reconstructed attenuation map, which is then used to reconstruct the activity map using an ordered subsets expectation maximization-based reconstruction approach. We objectively evaluated the performance of this method using a highly realistic simulation study conducted on the clinically relevant task of detecting perfusion defects in myocardial perfusion SPECT. Our results showed no statistically significant differences between the performance achieved using the proposed method and that with the true attenuation maps. Visually, the images reconstructed using the proposed method looked similar to those with the true attenuation map. Overall, these results provide evidence of the capability of the proposed method to perform transmission-less AC and motivate further evaluation.

physics.med-ph↗

arXiv2020

A no-gold-standard technique to objectively evaluate quantitative imaging methods using patient data: Theory

Objective evaluation of quantitative imaging (QI) methods using measurements directly obtained from patient images is highly desirable but hindered by the non-availability of gold standards. To address this issue, statistical techniques have been proposed to objectively evaluate QI methods without a gold standard. These techniques assume that the measured and true values are linearly related by a slope, bias, and normally distributed noise term, where it is assumed that the noise term between the different methods is independent. However, the noise could be correlated since it arises in the process of measuring the same true value. To address this issue, we propose a new no-gold-standard evaluation (NGSE) technique that models this noise as a multivariate normally distributed term, characterized by a covariance matrix. In this manuscript, we derive a maximum-likelihood-based technique that, without any knowledge of the true QI values, estimates the slope, bias, and covariance matrix terms. These are then used to rank the methods on the basis of precision of the measured QI values. Overall, the derivation demonstrates the mathematical premise behind the proposed NGSE technique.

stat.ME↗

arXiv2020

A list-mode OSEM-based attenuation and scatter compensation method for SPECT

Reliable attenuation and scatter compensation (ASC) is a prerequisite for quantification and beneficial for visual interpretation tasks in SPECT. In this paper, we develop a reconstruction method that uses the entire SPECT emission data, i.e. data in both the photopeak and scatter windows, acquired in list-mode format and including the energy attribute of the detected photon, to perform ASC. We implemented a GPU-based version of this method using an ordered subsets expectation maximization (OSEM) algorithm. The method was objectively evaluated using realistic simulation studies on the task of estimating uptake in the striatal regions of the brain in a 2-D dopamine transporter (DaT)-scan SPECT study. We observed that inclusion of data from the scatter window and using list-mode data yielded improved quantification compared to using data only from the photopeak window or using binned data. These results motivate further development of list-mode-based ASC methods that include scatter-window data for SPECT.

physics.med-ph↗

arXiv2020

A Physics-Guided Modular Deep-Learning Based Automated Framework for Tumor Segmentation in PET Images

The objective of this study was to develop a PET tumor-segmentation framework that addresses the challenges of limited spatial resolution, high image noise, and lack of clinical training data with ground-truth tumor boundaries in PET imaging. We propose a three-module PET-segmentation framework in the context of segmenting primary tumors in 3D FDG-PET images of patients with lung cancer on a per-slice basis. The first module generates PET images containing highly realistic tumors with known ground-truth using a new stochastic and physics-based approach, addressing lack of training data. The second module trains a modified U-net using these images, helping it learn the tumor-segmentation task. The third module fine-tunes this network using a small-sized clinical dataset with radiologist-defined delineations as surrogate ground-truth, helping the framework learn features potentially missed in simulated tumors. The framework's accuracy, generalizability to different scanners, sensitivity to partial volume effects (PVEs) and efficacy in reducing the number of training images were quantitatively evaluated using Dice similarity coefficient (DSC) and several other metrics. The framework yielded reliable performance in both simulated (DSC: 0.87 (95% CI: 0.86, 0.88)) and patient images (DSC: 0.73 (95% CI: 0.71, 0.76)), outperformed several widely used semi-automated approaches, accurately segmented relatively small tumors (smallest segmented cross-section was 1.83 cm2), generalized across five PET scanners (DSC: 0.74), was relatively unaffected by PVEs, and required low training data (training with data from even 30 patients yielded DSC of 0.70). In conclusion, the proposed framework demonstrated the ability for reliable automated tumor delineation in FDG-PET images of patients with lung cancer.

physics.med-ph↗

arXiv2020

Fisher information analysis of list-mode SPECT emission data for joint estimation of activity and attenuation distribution

The potential to perform attenuation and scatter compensation (ASC) in single-photon emission computed tomography (SPECT) imaging using only the SPECT emission data is highly significant. In this context, attenuation in SPECT is primarily due to Compton scattering, where the probability of Compton scatter is proportional to the attenuation coefficient of the tissue and the energy of the scattered photon and the scattering angle are related. Given this premise, we investigate whether the SPECT scattered-photon data acquired in list-mode (LM) format and including the energy information can be used to estimate the attenuation map. For this purpose, we propose a Fisher-information-based method that yields the Cramer-Rao bound (CRB) for the task of jointly estimating the activity/attenuation distribution using only the SPECT emission data. The proposed method is applied to analyze the information content of SPECT LM emission data in a 2D SPECT system using computational studies with digital phantoms for different photon-count levels. The results show that scattered photons contain information to estimate the attenuation coefficients. An increase in the number of detected photons leads to lower CRB for both the attenuation and activity coefficients. Also, the CRB obtained for the attenuation and activity coefficients is typically much lower than the true value of these coefficients. Further, processing the emission data in LM format yields a lower CRB in comparison to binning data. Finally, we observe that systems with better energy resolution yield a lower CRB for the attenuation coefficient. Overall, the results provide strong evidence that LM SPECT emission data, including the scattered photons, contains information to jointly estimate the activity and attenuation coefficients.

physics.med-ph↗

arXiv2018

Image reconstruction in fluorescence molecular tomography with sparsity-initialized maximum-likelihood expectation maximization

We present a reconstruction method involving maximum-likelihood expectation maximization (MLEM) to model Poisson noise as applied to fluorescence molecular tomography (FMT). MLEM is initialized with the output from a sparse reconstruction-based approach, which performs truncated singular value decomposition-based preconditioning followed by fast iterative shrinkage-thresholding algorithm (FISTA) to enforce sparsity. The motivation for this approach is that sparsity information could be accounted for within the initialization, while MLEM would accurately model Poisson noise in the FMT system. Simulation experiments show the proposed method significantly improves images qualitatively and quantitatively. The method results in over 20 times faster convergence compared to uniformly initialized MLEM and improves robustness to noise compared to pure sparse reconstruction. We also theoretically justify the ability of the proposed approach to reduce noise in the background region compared to pure sparse reconstruction. Overall, these results provide strong evidence to model Poisson noise in FMT reconstruction and for application of the proposed reconstruction framework to FMT imaging.

physics.med-ph↗

arXiv2018

Application of computational breast phantoms to evaluate reconstruction methods for fluorescence molecular tomography

Fluorescence molecular tomography (FMT) has potential of providing high contrast images for breast tumor detection. Computational phantom provides a convenient way to a wide variety of fluorophore distribution configurations in patients and perform comprehensive evaluation of the imaging systems and methods for FMT. In this study, a digital breast phantom was used to compare the performance of a novel sparsity-based reconstruction method and Tikhonov regularization method for resolving tumors with different amount of separation. The results showed that the proposed sparse reconstruction method yielded better performance. This simulation-based approach with computational phantoms enabled an evaluation of the reconstruction methods for FMT for breast-cancer detection.

physics.med-ph↗