arXiv subjects

Abraham Nitzan

Publications and source records attributed to Abraham Nitzan.

At least 37 records · Page 2Linked to original sources

arXiv2025

Chiral Vibrational Modes in Small Molecules

The development of quantitative methods for characterizing molecular chirality can provide an important tool for studying chirality induced phenomena in molecular systems. Significant progress has been made in recent years toward understanding the chirality of molecular normal vibrational modes, mostly focusing on vibrations of helical molecular structures. In the present study, we examine the applicability two methodologies previously used for helical structures for the quantification of the chirality of molecular normal modes across a range of small, not necessarily helical, molecules. The first approach involves the application of the Continuous Chirality Measure (CCM) to each normal mode by associating the mode with a structure formed by imposing the corresponding motion about a common origin. The second approach assigns to each normal mode a pseudoscalar defined as the product of atomic linear and angular momentum summed over all atoms. In particular, using the CCM also as a measure of the chirality of the underlying molecular structure, we establish the existence of correlation between the chirality of molecular normal modes and that of the underlying molecular structure. Furthermore, we find that normal modes associated with different frequency ranges of the molecular vibrational spectrum exhibit distinct handedness behavior.

physics.chem-ph↗

arXiv2025

Unveiling the Dance of Molecules: Ro-Vibrational Dynamics of Molecules under Intense Illumination at Complex Plasmonic Interfaces

Understanding the quantum dynamics of strongly coupled molecule-cavity systems remains a significant challenge in molecular polaritonics. This work develops a comprehensive self-consistent model simulating electromagnetic interactions of diatomic molecules with quantum ro-vibrational degrees of freedom in resonant optical cavities. The approach employs an efficient numerical methodology to solve coupled Schrodinger-Maxwell equations in real space-time, enabling three-dimensional simulations through a novel molecular mapping technique. The study investigates relaxation dynamics of an ensemble of molecules following intense resonant pump excitation in Fabry-Perot cavities and at three-dimensional plasmonic metasurfaces. The simulations reveal dramatically modified relaxation pathways inside cavities compared to free space, characterized by persistent molecular alignment arising from cavity-induced rotational pumping. They also indicate the presence of a previously unreported relaxation stabilization mechanism driven by dephasing of the collective molecular-cavity mode. Additionally, the study demonstrates that strong molecular coupling significantly modifies the circular dichroism spectra of chiral metasurfaces, suggesting new opportunities for controlling light-matter interactions in quantum optical systems.

physics.chem-ph↗

arXiv2025

Quantifying the Chirality of Vibrational Modes in Helical Molecular Chains

Chiral phonons have been proposed to be involved in various physical phenomena, yet the chirality of molecular normal modes has not been well defined mathematically. Here we examine two approaches for assigning and quantifying the chirality of molecular normal modes in double-helical molecular wires with various levels of twist. First, associating with each normal mode a structure obtained by imposing the corresponding motion on a common origin, we apply the Continuous Chirality Measure (CCM) to quantitatively assess the relationship between the chirality-weighted normal mode spectrum and the chirality of the underlying molecular structure. We find that increasing the amount of twist in the double helix shifts the mean normal mode CCM to drastically higher values, implying that the chirality of molecular normal modes is strongly correlated with that of the underlying molecular structure. Second, we assign to each normal mode a pseudoscalar defined as the product of atomic linear and angular momentum summed over all atoms, and we analyze the handedness of the normal mode spectrum with respect to this quantity. We find that twisting the double-chain structure introduces asymmetry between right and left-handed normal modes so that in twisted structures different frequency bands are characterized by distinct handedness. This may give rise to global phenomena such as thermal chirality.

cond-mat.mes-hall↗

arXiv2024

Molecular chirality quantification: Tools and benchmarks

Molecular chirality has traditionally been viewed as a binary property where a molecule is classified as either chiral or achiral, yet in the recent decades mathematical methods for quantifying chirality have been explored. Here we use toy molecular systems to systematically compare the performance of two state of the art chirality measures (1) the Continuous Chirality Measure (CCM) and (2) the Chirality Characteristic ($χ$). We find that both methods exhibit qualitatively similar behavior when applied to simple molecular systems such as a four-site molecule or the polymer double-helix, but we show that the CCM may be more suitable for evaluating the chirality of arbitrary molecules or abstract structures such as normal vibrational modes. We discuss a range of considerations for applying these methods to molecular systems in general, and we provide links to user-friendly codes for both methods. We aim this paper to serve as a concise resource for scientists attempting to familiarize themselves with these chirality measures or attempting to implement chirality measures in their own work.

physics.chem-ph↗

arXiv2024

Quantum Information Engines: Assessing Time, Cost and Performance Criteria

In this study, we investigate the crucial role of measurement time ($t_m$), information gain and energy consumption in information engines (IEs) utilizing a von-Neumann measurement model. These important measurement parameters allow us to analyze the efficiency and power output of these devices. As the measurement time increases, the information gain and subsequently the extracted work also increase. However, there is a corresponding increase in the energetic cost. The efficiency of converting information into free energy diminishes as $t_m$ approaches both 0 and infinity, peaking at intermediate values of $t_m$. The power output (work extracted per times) also reaches a maximum at specific operational time regimes. By considering the product of efficiency and power as a performance metric, we can identify the optimal operating conditions for the IE.

quant-ph↗

arXiv2023

Heat Transport with a Twist

Despite the desirability of polymers for use in many products due to their flexibility, light weight, and durability, their status as thermal insulators has precluded their use in applications where thermal conductors are required. However, recent results suggest that the thermal conductance of polymers can be enhanced and that their heat transport behaviors may be highly sensitive to nanoscale control. Here we use non-equilibrium molecular dynamics (MD) simulations to study the effect of mechanical twist on the steady-state thermal conductance across multi-stranded polyethylene wires. We find that a highly twisted double-helical polyethylene wire can display a thermal conductance up to three times that of its untwisted form, an effect which can be attributed to a structural transition in the strands of the double helix. We also find that in thicker wires composed of many parallel strands, adding just one twist can increase its thermal conductance by over 30%. However, we find that unlike stretching a polymer wire, which causes a monotonic increase in thermal conductance, the effect of twist is highly non-monotonic, and certain amounts of twist can actually decrease the thermal conductance. Finally, we apply the Continuous Chirality Measure (CCM) in an attempt to explore the correlation between heat conductance and chirality. The CCM is found to correlate with twist as expected, but we attribute the observed heat transport behaviors to structural factors other than chirality.

physics.comp-ph↗

arXiv2023

Kubo-Anderson theory of polariton lineshape

We apply the Kubo-Anderson stochastic theory of molecular spectral lineshape to the case of polaritons formed in the collective strong coupling regime. We investigate both the fast and slow limits of the random frequency modulation of the emitter as well as the intermediate regime and show how the interplay between the characteristic timescales of the cavity and the molecular disorder is expressed in the observed polaritons lineshapes. The analytical solution obtained for the slow limit is valid for any ratio between the inhomogeneous broadening of the molecules and the Rabi splitting, especially relevant for molecular polaritons where these two quantities can be of the same order of magnitude.

physics.chem-ph↗

arXiv2023

On the nature of polariton transport in a Fabry-Perot Cavity

Fabry-Perot microcavities can strongly enhance interactions between light and molecules, leading to the formation of hybrid light-matter states known as polaritons. Polaritons possess much smaller effective masses and much larger group velocities when the molecules are resonant with cavity modes that have finite (non-zero) in-plane wavevectors, giving rise to the possibilities of long-range and ultrafast ballistic transport. In this paper, we present results of numerical simulations of the ultrafast ballistic transport phenomenon in real space and time during and after initialization with a short, spatially localized pulse. We find that the transport of the molecular excitons as induced by the external light field is synchronized with the evolution of the enhanced and localized electromagnetic field inside the cavity. Moreover, the synchronized transport rate is in good agreement with the group velocities predicted from a calculated dispersion relation across a wide range of frequencies. These simulations provide an intuitive tool for understanding the collective motion of light and excitons and helps to better understand how experimental observations of polaritons should be interpreted.

physics.chem-ph↗

arXiv2023

On the nature of two-photon transitions for a Collection of Molecules in a Fabry-Perot Cavity

We investigate the effect of a cavity on nonlinear two-photon transitions of a molecular system and how such an effect depends on the cavity quality factor, the field enhancement and the possibility of dephasing. We find that the molecular response to strong light fields in a cavity with variable quality factor can be understood as arising from a balance between (i) the ability of the cavity to enhance the field of an external probe and promote multiphoton transitions more easily and (ii) the fact that the strict selection rules on multiphoton transitions in a cavity support only one resonant frequency within the excitation range. Although our simulations use a classical-level description of the radiation field (i.e. we solve Maxwell-Bloch or Maxwell-Liouville equations within the Ehrenfest approximation for the field-molecule interaction), based on experience with this level of approximation in past studies of plasmonic and polaritonic systems, we believe that our results are valid over a wide range of external probing.

quant-ph↗

arXiv2023

Quantum bath augmented stochastic nonequilibrium atomistic simulations for molecular heat conduction

Classical molecular dynamics (MD) has been shown to be effective in simulating heat conduction in certain molecular junctions since it inherently takes into account some essential methodological components which are lacking with quantum Landauer-type transport model, such as many-body full force-field interactions, anharmonicity effects and nonlinear responses for large temperature biases. However, the classical mechanics reaches its limit in the environments where the quantum effects are significant (e.g. with low-temperatures substrates, presence of extremely high frequency molecular modes). Here, we present an atomistic simulation methodology for molecular heat conduction that incorporates the quantum Bose-Einstein statistics into an effective temperature in the form of modified Langevin equation. We show that the results from such a quasi-classical effective temperature (QCET) MD method deviates drastically when the baths temperature approaches zero from classical MD simulations and the results converge to the classical ones when the bath approaches the high-temperature limit, which makes the method suitable for full temperature range. In addition, we show that our quasi-classical thermal transport method can be used to model the conducting substrate layout and molecular composition (e.g. anharmonicities, high-frequency modes). Anharmonic models are explicitly simulated via the Morse potential and compared to pure harmonic interactions, to show the effects of anharmonicities under quantum colored bath setups. Finally, the chain length dependence of heat conduction is examined for one-dimensional polymer chains placed in between quantum augmented baths.

cond-mat.mtrl-sci↗

arXiv2023

Energy Conversion and Entropy Production in Biased Random Walk Processes -- from Discrete Modeling to the Continuous Limit

We consider discrete and continuous representations of a thermodynamic process in which a random walker (e.g. a molecular motor on a molecular track) uses a periodically pumped energy (work) to pass $N$ sites and move energetically downhill while dissipating heat. Interestingly, we find that, starting from a discrete model, the limit in which the motion becomes continuous in space and time ($N\to \infty$) is not unique and depends on what physical observables are assumed to be unchanged in the process. In particular, one may (as usually done) choose to keep the speed and diffusion coefficient fixed during this limiting process, in which case the entropy production is affected. In addition, we study also processes in which the entropy production is kept constant as $N\to \infty$ at the cost of modified speed or diffusion coefficient. Furthermore, we also combine this dynamics with work against an opposing force, which makes it possible to study the effect of discretization of the process on the thermodynamic efficiency of transferring power input to power output. Interestingly, we find that the efficiency is increased in the limit of $N\to\infty$. Finally, we investigate the same process when transitions between sites can only happen at finite time intervals and study the impact of this time discretization on the thermodynamic variables as the continuous limit is approached.

cond-mat.stat-mech↗

arXiv2023

Electron Dynamics in Open Quantum Systems: The Driven Liouville-von Neumann Methodology within Time Dependent Density Functional Theory

A first-principles approach to describe electron dynamics in open quantum systems driven far from equilibrium via external time-dependent stimuli is introduced. Within this approach, the driven Liouville von Neumann methodology is used to impose open boundary conditions on finite model systems, whose dynamics is described using time-dependent density functional theory. As proof of concept, the developed methodology is applied to simple spin-compensated model systems including a hydrogen chain and a graphitic molecular junction. Good agreement between steady-state total currents obtained via direct propagation and from the self-consistent solution of the corresponding Sylvester equation indicates the validity of the implementation. The capability of the new computational approach to analyze, from first principles, non-equilibrium dynamics of open quantum systems in terms of temporally and spatially resolved current densities is demonstrated. Future extensions of the approach towards the description of dynamical magnetization and decoherence effects are briefly discussed.

cond-mat.mes-hall↗

arXiv2023

Electron hopping heat transport in molecules

The realization of single-molecule thermal conductance measurements has driven the need for theoretical tools to describe conduction processes that occur over atomistic length scales. In macroscale systems, the principle that is typically used to understand thermal conductivity is Fourier's law. At molecular length scales, however, deviations from Fourier's law are common in part because microscale thermal transport properties typically depend on the complex interplay between multiple heat conduction mechanisms. Here, the thermal transport properties that arise from electron transfer across a thermal gradient in a molecular conduction junction are examined theoretically. We illustrate how transport in a model junction is affected by varying the electronic structure and length of the molecular bridge in the junction as well as the strength of the coupling between the bridge and its surrounding environment. Three findings are of note: First, the transport properties can vary significantly depending on the characteristics of the molecular bridge and its environment; second, the system's thermal conductance commonly deviates from Fourier's law; and third, in properly engineered systems, the magnitude of electron hopping thermal conductance is similar to what has been measured in single-molecule devices.

cond-mat.mes-hall↗

arXiv2023

Comparing semiclassical mean-field and 1-exciton approximations in evaluating optical response under strong light-matter coupling conditions

The rigorous quantum mechanical description of the collective interaction of many molecules with the radiation field is usually considered numerically intractable, and approximation schemes must be employed. Standard spectroscopy usually contains some levels of perturbation theory, but under strong coupling conditions, other approximations are used. A common approximation is the 1-exciton model in which processes involving weak excitations are described using a basis comprising of the ground state and singly excited states of the molecule cavity-mode system. In another frequently used approximation in numerical investigations, the electromagnetic field is described classically, and the quantum molecular subsystem is treated in the mean-field Hartree approximation with its wavefunction assumed to be a product of single molecules' wavefunctions. The former disregards states that take long time to populate, and is therefore essentially a short time approximation. The latter is not limited in this way, but by its nature, disregards some intermolecular and molecule-field correlations. In this work, we directly compare results obtained from these approximations when applied to several prototype problems involving the optical response of molecule-in-optical cavities systems. In particular, we show that our recent model investigation (J. Chem. Phys. 157, 114108 (2022)) of the interplay between the electronic strong coupling and molecular nuclear dynamics using the truncated 1-exciton approximation agrees very well with the semiclassical mean-field calculation.

physics.chem-ph↗

arXiv2023

Short-time particle motion in one and two-dimensional lattices with site disorder

Like a free particle, the initial growth of a broad (relative to lattice spacing) wavepacket placed on an ordered lattice is slow (zero initial slope) and becomes linear in $t$ at long time. On a disordered lattice, the growth is inhibited at long time (Anderson localization). We consider site disorder with nearest-neighbor hopping on 1- and 2-dimensional systems, and show via numerical simulations supported by the analytical study that the short time growth of the particle distribution is faster on the disordered lattice than on the ordered one. Such faster spread takes place on time and length scale that may be relevant to the exciton motion in disordered systems.

physics.chem-ph↗

arXiv2022

The Interplay between Disorder, Local Relaxation and Collective Behaviors for an ensemble of emitters outside vs inside cavity

The interplay between collective optical response and molecular static and dynamic disorder is studied using simple effective Hamiltonians for an ensemble of two-level emitters inside and outside a single-mode cavity. We model environmental disorder by randomly modulating the molecular transition frequencies and the coupling between the emitters and the electromagnetic field. We also consider effects of intermolecular interactions and orientational disorder. We investigate how these effects lead to new features in the steady state absorption (outside the cavity), transmission spectra (inside the cavity) and the yield of local molecular processes such as a unimolecular reaction. Outside the cavity, the collective behavior is manifested in the linewidth of the steady state absorption, the emission spectrum, and the local chemical yield. Inside the cavity, however, the collective behavior primarily determines the Rabi splitting. Effects of intermolecular interactions under orientational disorder are also studied. For the most part, for all types of disorder, if we increase disorder, we find a reduction in the collective nature of the molecular response (smaller effective N), and therefore, the Rabi splitting contraction occurs with orientational disorder. Moreover, we find that static disorder is more destructive to collective behavior than dynamic disorder.

physics.chem-ph↗

arXiv2022

Noise and Thermodynamic Uncertainty Relation in "Underwater" Molecular Junctions

We determine the zero-frequency charge current noise in a metal-molecule-metal junction embedded in a thermal environment, e.g., a solvent, dominated by sequential charge transmission described by a classical master equation, and study its dependence of specific model parameters, i.e., the environmental reorganization energy and relaxation behavior. Interestingly, the classical current noise term has the same structure as its quantum analog which reflects a charge correlation due to the bridging molecule. We further determine the thermodynamic uncertainty relation (TUR) which defines a bound on the relationship between the average charge current, its fluctuation and the entropy production in an electrochemical junction in the Marcus regime. In a second part, we use the same methodology to calculate the current noise and the TUR for a protoype photovoltaic cell in order to predict its upper bound for the efficiency of energy conversion into useful work.

physics.chem-ph↗

arXiv2022

Dissociation slowdown by collective optical response under strong coupling conditions

We consider an ensemble of diatomic molecules resonantly coupled to an optical cavity under strong coupling conditions at normal incidence. Photodissociation dynamics is examined via direct numerical integration of the coupled Maxwell-Schrodinger equations with molecular ro-vibrational degrees of freedom explicitly taken into account. It is shown that the dissociation is significantly affected (slowed down) when the system is driven at its polaritonic frequencies. The observed effect is demonstrated to be of transient nature and has no classical analog. An intuitive explanation of the dissociation slowdown at polaritonic frequencies is proposed.

physics.chem-ph↗