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Adam Chojecki

Publications and source records attributed to Adam Chojecki.

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A new class of colored Gaussian graphical models with explicit normalizing constants

We study Bayesian model selection in colored Gaussian graphical models (CGGMs), which combine sparsity of conditional independencies with symmetry constraints encoded by vertex- and edge-colored graphs. A computational bottleneck in Bayesian inference for CGGMs is the evaluation of Diaconis-Ylvisaker normalizing constants, given by gamma-type integrals over cones of precision matrices with prescribed zeros and equality constraints. While explicit formulas are known for standard Gaussian graphical models only in special cases (e.g. decomposable graphs) and for a limited class of RCOP models, no general tractable framework has been available for broader families of CGGMs. We introduce a new subclass of RCON models for which these normalizing constants admit closed-form expressions. On the algebraic side, we identify conditions on spaces of colored precision matrices that guarantee tractability of the associated integrals, leading to Block-Cholesky spaces (BC-spaces) and Diagonally Commutative Block-Cholesky spaces (DCBC-spaces). On the combinatorial side, we characterize the colored graphs inducing such spaces via a color perfect elimination ordering and a 2-path regularity condition, and define the resulting Color Elimination-Regular (CER) graphs and their symmetric variants. This class strictly extends decomposable graphs in the uncolored setting and contains all RCOP models associated with decomposable graphs. In the one-color case, our framework reveals a close connection between DCBC-spaces and Bose-Mesner algebras. For models defined on BC- and DCBC-spaces, we derive explicit closed-form formulas for the normalizing constants in terms of a finite collection of structure constants and propose an efficient method for computing them in the commutative case. Our results broaden the range of CGGMs amenable to principled Bayesian structure learning in high-dimensional applications.

math.ST

Identifying Network Hubs with the Partial Correlation Graphical LASSO

Graphical LASSO (GLASSO) is a widely used method for estimating sparse precision matrices and learning undirected graphical models in high-dimensional settings. Because GLASSO penalizes entries of the precision matrix directly, however, it is not scale-invariant. Partial Correlation Graphical LASSO (PCGLASSO), introduced by Carter et al. (2024), addresses this limitation by penalizing partial correlations, which directly characterize conditional dependence. In this paper, we study both statistical and computational properties of the PCGLASSO estimator. Our main contribution is the introduction of a scale-invariant irrepresentability condition for PCGLASSO and the proof that this condition is sufficient for consistent model selection. We further show that this condition is weaker than the corresponding irrepresentability condition for GLASSO, helping to explain the improved empirical behavior of PCGLASSO in settings such as hub-structured graphs. In addition, we develop two efficient algorithms for computing the estimator and analyze the nonconvex optimization problem underlying PCGLASSO, deriving conditions for global uniqueness and showing consistency of all minimizers.

math.ST

Learning permutation symmetries with gips in R

The study of hidden structures in data presents challenges in modern statistics and machine learning. We introduce the $\mathbf{gips}$ package in R, which identifies permutation subgroup symmetries in Gaussian vectors. $\mathbf{gips}$ serves two main purposes: exploratory analysis in discovering hidden permutation symmetries and estimating the covariance matrix under permutation symmetry. It is competitive to canonical methods in dimensionality reduction while providing a new interpretation of the results. $\mathbf{gips}$ implements a novel Bayesian model selection procedure within Gaussian vectors invariant under the permutation subgroup introduced in Graczyk, Ishi, Ko{\l}odziejek, Massam, Annals of Statistics, 50 (3) (2022).

stat.CO