arXiv subjects

Adam Lahouari

Publications and source records attributed to Adam Lahouari.

3 recordsLinked to original sources

arXiv2026

MolCryst-MLIPs: A Machine-Learned Interatomic Potentials Database for Molecular Crystals

We present an open Molecular Crystal (MC) database of Machine-Learned Interatomic Potentials (MLIP) called MolCryst-MLIPs. The first release comprises fine-tuned MACE models for nine molecular crystal systems---Benzamide, Benzoic acid, Coumarin, Durene, Isonicotinamide, Nicotinic acid , Niacinamide, Pyrazinamide, and Resorcinol---developed using the Automated Machine Learning Pipeline (AMLP), which streamlines the entire MLIP development workflow, from reference data generation to model training and validation, into a reproducible and user-friendly pipeline. Models are fine-tuned from the MACE-MH-1 foundation model omol head), yielding a mean energy MAE of 0.141 kJ/mol/atom and a mean force MAE of 0.648 kJ/mol/Angstrom across all systems. Benchmarked against three state-of-the-art foundation models on the DFT-labelled polymorph set, only the fine-tuned models resolve the polymorphic energy landscape. Dynamical stability and structural integrity, as assessed through energy conservation, P2 orientational order parameters, and radial distribution functions, are evaluated using molecular dynamics simulations. The released models and datasets constitute a growing open database of validated MLIPs, ready for production MD simulations of molecular crystal polymorphism across the polymorphic landscape of each target compound under different thermodynamic conditions.

cs.LG↗

arXiv2025

Automated Machine Learning Pipeline: Large Language Models-Assisted Automated Dataset Generation for Training Machine-Learned Interatomic Potentials

Machine learning interatomic potentials (MLIPs) have become powerful tools to extend molecular simulations beyond the limits of quantum methods, offering near-quantum accuracy at much lower computational cost. Yet, developing reliable MLIPs remains difficult because it requires generating high-quality datasets, preprocessing atomic structures, and carefully training and validating models. In this work, we introduce an Automated Machine Learning Pipeline (AMLP) that unifies the entire workflow from dataset creation to model validation. AMLP employs large-language-model agents to assist with electronic-structure code selection, input preparation, and output conversion, while its analysis suite (AMLP-Analysis), based on ASE supports a range of molecular simulations. The pipeline is built on the MACE architecture and validated on acridine polymorphs, where, with a straightforward fine-tuning of a foundation model, mean absolute errors of ~1.7 meV/atom in energies and ~7.0 meV/{\AA} in forces are achieved. The fitted MLIP reproduces DFT geometries with sub-{\AA} accuracy and demonstrates stability during molecular dynamics simulations in the microcanonical and canonical ensembles.

cond-mat.mtrl-sci↗

arXiv2023

ReaxFF Simulations of Self-Assembled Monolayers On Silver Surfaces and Nanocrystals

The self-assembled monolayers of alkane thiolates on Ag (111) surfaces and nanoparticles are studied using molecular dynamics. Reactive force fields allow simulations of very large systems such as nanoparticles of 10 nm. Stable (sqrt(7) X sqrt(7))R19.1{\deg} assemblies are obtained as experimentally observed for these systems. Only nanoparticles smaller than 4 nm show a spontaneous restructuration of the metallic core. The preferred adsorption site is found to be in an on-top position, in good agreement with recent X-ray absorption near edge structure experiments. Moreover, similar distances between the sulfur headgroups are found on the facets and edges.

physics.chem-ph↗