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Adam Summers

Publications and source records attributed to Adam Summers.

7 recordsLinked to original sources

X-ray Driven Trihydrogen Formation on Silica Nanosurfaces

The trihydrogen cation ($\mathrm{H_3^+}$) initiates the ion-molecule reactions that build molecular complexity in interstellar space. Whether its canonical formation reaction, $\mathrm{H_2^+ + H_2 \rightarrow H_3^+ + H}$, proceeds on inorganic surfaces under radiation-driven ionization has remained untested. Here we drive $\mathrm{H_3^+}$ formation on hydrated silica nanoparticles using intense 1.88 keV X-ray pulses, combining ion velocity map imaging, electron time-of-flight spectroscopy, and single-particle coherent diffractive imaging to resolve this chemistry on individual particles. The self-induced surface electric field on the V/nm scale drives interfacial charge transfer and water fragmentation. This field is the dominant parameter governing the relative yields of $\mathrm{H^+}$, $\mathrm{H_2^+}$, and $\mathrm{H_3^+}$ across particle size, composition, and aggregation. Density functional theory and nonadiabatic quantum molecular dynamics simulations trace this field-driven charge transfer, directly analogous to band bending at semiconductor photoelectrodes. These results establish surface-field-driven charge transfer as a unifying mechanism between radiation dominated astrophysical environments and field-driven surface catalysis.

physics.chem-ph

Elucidating Norrish Type-I reactive pathways by ultrafast X-ray absorption spectroscopy

Norrish type I reactions selectively cleave carbon-carbon bonds directly adjacent to carbonyl groups. Despite their broad use in combination with aromatic carbonyls for additive manufacturing and dental UV curing applications, the nature of the photochemically active state and its population mechanism remain insufficiently understood. Detailed mechanistic insight requires mapping of the photoexcited population flow involving internal conversion and intersystem crossing. We present a time-domain study of gas phase acetophenone as a prototypical aromatic carbonyl combining soft X-ray time-resolved near-edge X-ray absorption fine structure (TR-NEXAFS) spectroscopy at the oxygen K-edge with ab initio multiple spawning (AIMS) simulations. Exploiting the specific sensitivity of TR-NEXAFS spectroscopy to states with $n\pi^*$ character, we observe population transfer from the initially excited $^1\pi\pi^*$ state to the $^1n\pi^*$ state with a time constant of $(0.13 \pm 0.02)$ ps after an initial induction period of $(0.12 \pm 0.02)$ ps without population transfer, in quantitative agreement with the AIMS simulations. The population in the $^1n\pi^*$ state subsequently decays via intersystem crossing, likely mediated by a $^3\pi\pi^*$ state, within $(3.17 \pm 0.66)$ ps to a long-lived $^3n\pi^*$ state, which is presumed to be active towards Norrish type I chemistry.

physics.chem-ph

Forking Anatomy: How MorphoDepot Applies the Open-Source Development Model to 3D Digital Morphology

The increasing use of 3D imaging technologies in biological sciences is generating vast repositories of anatomical data, yet significant barriers prevent this data from reaching its full potential in educational and collaborative contexts. While sharing raw CT and MRI scans has become routine, distributing value-added segmented datasets, where anatomical structures are precisely labeled and delineated, remains difficult and rare. Current repositories function primarily as static archives, lacking mechanisms for iterative refinement, community-driven curation, standardized orientation protocols, and the controlled terminology essential for downstream computational applications, including artificial intelligence, to help us analyze and interpret these unprecedented data resources. We introduce MorphoDepot, a framework that adapts the "fork-and-contribute" model, a cornerstone of modern open-source software development, for collaborative management of 3D morphological data. By integrating git version control and GitHub's "social" collaborative infrastructure with 3D Slicer and its SlicerMorph extension, MorphoDepot transforms segmented anatomical datasets from static resources into dynamic, community-curated projects. This approach directly addresses the challenges of distributed collaboration, enforces transparent provenance tracking, and creates high-quality, standardized training data for AI model development. The result is a system that embodies FAIR (Findable, Accessible, Interoperable, and Reusable) data principles while creating powerful new opportunities for remote learning and collaborative science for biological sciences in general and evolutionary morphology in particular.

q-bio.QM

Design and Performance of a Magnetic Bottle Electron Spectrometer for High-Energy Photoelectron Spectroscopy

We describe the design and performance of a magnetic bottle electron spectrometer~(MBES) for high-energy electron spectroscopy. Our design features a ${\sim2}$~m long electron drift tube and electrostatic retardation lens, achieving sub-electronvolt (eV) electron kinetic energy resolution for high energy (several hundred eV) electrons with close to 4$\pi$ collection efficiency. A segmented anode electron detector enables the simultaneous collection of photoelectron spectra in high resolution and high collection efficiency modes. This versatile instrument is installed at the TMO endstation at the LCLS x-ray free-electron laser (XFEL). In this paper, we demonstrate its high resolution, collection efficiency and spatial selectivity in measurements where it is coupled to an XFEL source. These combined characteristics are designed to enable high-resolution time-resolved measurements using x-ray photoelectron, absorption, and Auger-Meitner spectroscopy. We also describe the pervasive artifact in MBES time-of-flight spectra that arises from a periodic modulation in electron detection efficiency, and present a robust analysis procedure for its removal.

physics.ins-det

Strong-field control of plasmonic properties in core-shell nanoparticles

The strong-field control of plasmonic nanosystems opens up new perspectives for nonlinear plasmonic spectroscopy and petahertz electronics. Questions, however, remain regarding the nature of nonlinear light-matter interactions at sub-wavelength spatial and ultrafast temporal scales. Addressing this challenge, we investigated the strong-field control of the plasmonic response of Au nanoshells with a SiO$_2$ core to an intense laser pulse. We show that the photoelectron energy spectrum from these core-shell nanoparticles displays a striking transition between the weak and strong-field regime. This observed transition agrees with the prediction of our modified Mie-theory simulation that incorporates the nonlinear dielectric nanoshell response. The demonstrated intensity-dependent optical control of the plasmonic response in prototypical core-shell nanoparticles paves the way towards ultrafast switching and opto-electronic signal modulation with more complex nanostructures.

physics.optics

Higher order harmonic generation and strong field ionization with Bessel-Gauss beams in a thin jet geometry

A promising alternative to Gaussian beams for use in strong field science is Bessel-Gauss (BG or Bessel-like) laser beams as they are easily produced with readily available optics and provide more flexibility of the spot size and working distances. Here we use BG beams produced with a lens-axicon optical system for higher order harmonic generation (HHG) in a thin gas jet. The finite size of the interaction region allows for scans of the HHG yield along the propagation axis. Further, by measuring the ionization yield in unison with the extreme ultraviolet (XUV) we are able to distinguish regions of maximum ionization from regions of optimum XUV generation. This distinction is of great importance for BG fields as the generation of BG beams with axicons often leads to oscillations of the on-axis intensity, which can be exploited for extended phase matching conditions. We observed such oscillations in the ionization and XUV flux along the propagation axis for the first time. As it is the case for Gaussian modes, the harmonic yield is not maximum at the point of highest ionization. Finally, despite Bessel beams having a hole in the center in the far field, the XUV beam is well collimated making BG modes a great alternative when spatial filtering of the fundamental is desired.

physics.optics

Unwind: Interactive Fish Straightening

The ScanAllFish project is a large-scale effort to scan all the world's 33,100 known species of fishes. It has already generated thousands of volumetric CT scans of fish species which are available on open access platforms such as the Open Science Framework. To achieve a scanning rate required for a project of this magnitude, many specimens are grouped together into a single tube and scanned all at once. The resulting data contain many fish which are often bent and twisted to fit into the scanner. Our system, Unwind, is a novel interactive visualization and processing tool which extracts, unbends, and untwists volumetric images of fish with minimal user interaction. Our approach enables scientists to interactively unwarp these volumes to remove the undesired torque and bending using a piecewise-linear skeleton extracted by averaging isosurfaces of a harmonic function connecting the head and tail of each fish. The result is a volumetric dataset of a individual, straight fish in a canonical pose defined by the marine biologist expert user. We have developed Unwind in collaboration with a team of marine biologists: Our system has been deployed in their labs, and is presently being used for dataset construction, biomechanical analysis, and the generation of figures for scientific publication.

cs.GR