arXiv subjects

Adolfo J. Banchio

Publications and source records attributed to Adolfo J. Banchio.

6 recordsLinked to original sources

arXiv2023

Simulations and integral-equation theories for dipolar density interacting disks

Integral equation theories (IETs) based on the Ornstein-Zernike (OZ) relation can be used as an analytical tool to predict structural and thermodynamic properties and phase behavior of fluids with low numerical cost. However, there are no studies of the IETs for the dipolar density interaction potential in 2D systems, a relevant inter-domain interaction in lipid monolayers with phase coexistence. This repulsive interaction arises due to the excess dipole density of the domains, which are aligned perpendicular to the interface. This work studies the performance of three closures of the OZ equation for this novel system: Rogers-Young (RY), Modified Hypernetted Chain (MHNC), and Variational Modified Hypernetted Chain (VMHNC). For the last two closures the bridge function of a reference system is required, being the hard disk the most convenient reference system. Given that in 2D there is no analytical expressions for the hard disk correlation functions, two different approximations are proposed: one based on the Percus-Yevick approximation (PY), and the other based on an extension of the hard spheres Verlet-Weis-Henderson-Grundke parameterization (LB). The accuracy of the five approaches is evaluated by comparison of the pair correlation function and the structure factor with Monte Carlo simulation data. The results show that RY closure is only satisfactory for low-structured regimes. MHNC and VMHNC closures perform globally well and there are no significant differences between them. However, the reference system in some cases affects their performance; when the pair correlation function serves as the measure, the LB--based closures quantitatively outperform the PY ones. From the point of view of its applicability, LB--based closures do not have a solution for all studied interaction strength parameters, and, in general, PY--based closures are numerically preferable.

physics.bio-ph↗

arXiv2021

Boosting micromachine studies with Stokesian Dynamics

Artificial microswimmers, nano and microrobots, are essential in many applications from engineering to biology and medicine. We present a Stokesian Dynamics study of the dynamical properties and efficiency of one of the simplest artificial swimmer, the three linked spheres swimmer (TLS), extensively shown to be an excellent and model example of a deformable micromachine. Results for two different swimming strokes are compared with an approximate solution based on point force interactions. While this approximation accurately reproduces the solutions for swimmers with long arms and strokes of small amplitude, it fails when the amplitude of the stroke is such that the spheres come close together, a condition where indeed the largest efficiencies are obtained. We find that swimmers with a "square stroke cycle" result more efficient than those with "circular stroke cycle" when the swimmer arms are long compared with the sphere radius, but the differences between the two strokes are smaller when the arms of the swimmers are short. This extended theoretical research of TLS incorporates a much precise description of the swimmer hydrodynamics, demonstrating the relevance of considering the finite size of the constitutive microswimmers spheres. This work expects to trigger future innovative steps contributing to the design of micro and nanomachines and its applications.

cond-mat.soft↗

arXiv2018

Dipolar interactions between domains in lipid monolayers at the air-water interface

A great variety of biologically relevant monolayers present phase coexistence characterized by domains formed by lipids in an ordered phase state dispersed in a continuous, disordered phase. The difference in surface densities between these phases originates inter-domain dipolar interactions, which are relevant for the determination of the spacial distribution of domains, as well as their dynamics. In this work, we propose a novel manner of estimating the dipolar repulsion using a passive method that involves the analysis of images of the monolayer with phase coexistence. The method is based on the comparison of the pair correlation function obtained from experiments with that obtained from Brownian dynamics simulations of a model system. As an example, we determined the difference in dipolar density of a binary monolayer of DSPC/DMPC at the air-water interface from the analysis of the radial distribution of domains, and the results are compared with those obtained by surface potential determinations. A systematic analysis for experimentally relevant parameter range is given, which may be used as a working curve for obtaining the dipolar repulsion in different systems.

physics.bio-ph↗

arXiv2018

Domain size polydispersity effects on the structural and dynamical properties in lipid monolayers with phase coexistence

Lipid monolayers with phase coexistence are a frequently used model for lipid membranes. In these systems, domains of the liquid-condensed phase always present size polydispersity. However, very few theoretical works consider size distribution effects on the monolayer properties. Because of the difference in surface densities, domains have excess dipolar density with respect to the surrounding liquid expanded phase, originating a dipolar inter-domain interaction. This interaction depends on the domain area, and hence the presence of a domain size distribution is associated with interaction polydispersity. Inter-domain interactions are fundamental to understanding the structure and dynamics of the monolayer. For this reason, it is expected that polydispersity significantly alters monolayer properties. By means of Brownian dynamics simulations, we study the radial distribution function (RDF), the average mean square displacement and the average time-dependent self-diffusion coefficient, D(t), of lipid monolayers with normal distributed size domains. It was found that polydispersity strongly affects the value of the interaction strength obtained, which is greatly underestimated if polydispersity is not considered. However, within a certain range of parameters, the RDF obtained from a polydisperse model can be well approximated by that of a monodisperse model, suitably fitting the interaction strength, even for 40% polydispersities. For small interaction strengths or small polydispersities, the polydisperse systems obtained from fitting the experimental RDF have an average mean square displacement and D(t) in good agreement with that of the monodisperse system.

physics.bio-ph↗

arXiv2017

Short- and long-time diffusion, and dynamic scaling in suspensions of charged colloidal particles

We report on a comprehensive theory-simulation-experimental study of collective and self-diffusion in suspensions of charge-stabilized colloidal spheres. In simulation and theory, the spheres interact by a hard-core plus screened Coulomb pair potential. Intermediate and self-intermediate scattering functions are calculated by accelerated Stokesian Dynamics simulations where hydrodynamic interactions (HIs) are fully accounted for. The study spans the range from the short-time to the colloidal long-time regime. Additionally, Brownian Dynamics simulation and mode-coupling theory (MCT) results are generated where HIs are neglected. It is shown that HIs enhance collective and self-diffusion at intermediate and long times, whereas at short times self-diffusion, and for certain wavenumbers also collective diffusion, are slowed down. MCT significantly overestimate the slowing influence of dynamic particle caging. The simulated scattering functions are in decent agreement with our dynamic light scattering (DLS) results for suspensions of charged silica spheres. Simulation and theoretical results are indicative of a long-time exponential decay of the intermediate scattering function. The approximate validity of a far-reaching time-wavenumber factorization of the scattering function is shown to be a consequence of HIs. Our study of collective diffusion is amended by simulation and theoretical results for the self-intermediate scattering function and the particle mean squared displacement (MSD). Since self-diffusion is not assessed in DLS measurements, a method to deduce the MSD approximately in DLS is theoretically validated.

cond-mat.soft↗

arXiv2011

Short-time Rheology and Diffusion in Suspensions of Yukawa-type Colloidal Particles

A comprehensive study is presented on the short-time dynamics in suspensions of charged colloidal spheres. The explored parameter space covers the major part of the fluid-state regime, with colloid concentrations extending up to the freezing transition. The particles are assumed to interact directly by a hard-core plus screened Coulomb potential, and indirectly by solvent-mediated hydrodynamic interactions (HIs). By comparison with accurate accelerated Stokesian Dynamics (ASD) simulations of the hydrodynamic function H(q), and the high-frequency viscosity, we investigate the accuracy of two fast and easy-to-implement analytical schemes. The first scheme, referred to as the pairwise additive (PA) scheme, uses exact two-body hydrodynamic mobility tensors. It is in good agreement with the ASD simulations of H(q) and the high-frequency viscosity, for smaller volume fractions up to about 10% and 20%, respectively. The second scheme is a hybrid method combining the virtues of the δγ-scheme by Beenakker and Mazur with those of the PA scheme. It leads to predictions in good agreement with the simulation data, for all considered concentrations, combining thus precision with computational efficiency. The hybrid method is used to test the accuracy of a generalized Stokes-Einstein (GSE) relation proposed by Kholodenko and Douglas, showing its severe violation in low salinity systems. For hard spheres, however, this GSE relation applies decently well.

cond-mat.soft↗