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Adrián Aguirre-Tamaral

Publications and source records attributed to Adrián Aguirre-Tamaral.

2 recordsLinked to original sources

A hyperbolic cell cycle law for early embryonic developmental timing

Across metazoans, early embryos exhibit a strikingly conserved slowing down of their cell duplication speed, despite widely varying developmental paces and underlying molecular mechanisms. Here we show that this common behavior arises because early development unfolds along a biochemical rather than a chronological timescale, resulting from the coupling of finite maternal resource consumption to the Michaelis-Menten-like kinetics governing the rates of the biochemical reactions involved in cell duplication. This leads to a hyperbolic growth of the Cell Cycle Length (CCL), approaching a mathematical singularity, which would correspond to developmental arrest. Data from a wide range of organisms -- cnidarians, nematodes, arthropods, molluscs, echinoderms, tunicates, amphibians, and fish -- collapse on a single curve, quantitatively capturing not only a universal CCL dynamical behaviour, but also key hallmarks of early metazoan development, including cell-number temporal evolution, the dependency of CCL on cell size, and, remarkably, gastrulation timing at the predicted singularity. Crucially, experimental modulation of resource availability and consumption rates validate the model and further demonstrate that a source of heterochrony in early development is an altered biochemical timescale of resource depletion. Overall, this work reveals resource consumption rates as a fundamental mechanism driving developmental timing in early embryogenesis across species.

physics.bio-ph↗

Polymerization and replication of primordial RNA induced by clay-water interface dynamics

In the study of life's origins, a key challenge is understanding how RNA could have polymerized and subsequently replicated in early Earth. We present a theoretical and computational framework to model the non-enzymatic polymerization of ribonucleotides and the template-dependent replication of primordial RNA molecules, at the interfaces between the aqueous solution and a clay mineral. Our results demonstrate that systematic polymerization and replication of single-stranded RNA polymers, sufficiently long to fold and acquire basic functions ($>$15 nt), were feasible under these conditions. Crucially, this process required a physico-chemical environment characterized by large-amplitude oscillations with periodicity compatible with spring tide dynamics, suggesting that large moons may have played a role in the emergence of RNA-based life on planetary bodies. Interestingly, the theoretical analysis presents rigorous evidence that RNA replication efficiency increases in oscillating environments compared to constant ones. Moreover, the versatility of our framework enables comparisons between different genetic alphabets, showing that a four-letter alphabet -- particularly when allowing non-canonical base pairs, as in current RNA -- represents an optimal balance of replication speed and sequence diversity in the pathway to life.

q-bio.BM↗