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Adriana Di Martino

Publications and source records attributed to Adriana Di Martino.

2 recordsLinked to original sources

Bayesian estimation of clustered dependence structures in functional neuroconnectivity

Motivated by the need to model the dependence between regions of interest in functional neuroconnectivity for efficient inference, we propose a new sampling-based Bayesian clustering approach for covariance structures of high-dimensional Gaussian outcomes. The key technique is based on a Dirichlet process that clusters covariance sub-matrices into independent groups of outcomes, thereby naturally inducing sparsity in the whole brain connectivity matrix. A new split-merge algorithm is employed to achieve convergence of the Markov chain that is shown empirically to recover both uniform and Dirichlet partitions with high accuracy. We investigate the empirical performance of the proposed method through extensive simulations. Finally, the proposed approach is used to group regions of interest into functionally independent groups in the Autism Brain Imaging Data Exchange participants with autism spectrum disorder and and co-occurring attention-deficit/hyperactivity disorder.

stat.ME↗

Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example

Resting-state functional Magnetic Resonance Imaging (R-fMRI) holds the promise to reveal functional biomarkers of neuropsychiatric disorders. However, extracting such biomarkers is challenging for complex multi-faceted neuropatholo-gies, such as autism spectrum disorders. Large multi-site datasets increase sample sizes to compensate for this complexity, at the cost of uncontrolled heterogeneity. This heterogeneity raises new challenges, akin to those face in realistic diagnostic applications. Here, we demonstrate the feasibility of inter-site classification of neuropsychiatric status, with an application to the Autism Brain Imaging Data Exchange (ABIDE) database, a large (N=871) multi-site autism dataset. For this purpose, we investigate pipelines that extract the most predictive biomarkers from the data. These R-fMRI pipelines build participant-specific connectomes from functionally-defined brain areas. Connectomes are then compared across participants to learn patterns of connectivity that differentiate typical controls from individuals with autism. We predict this neuropsychiatric status for participants from the same acquisition sites or different, unseen, ones. Good choices of methods for the various steps of the pipeline lead to 67% prediction accuracy on the full ABIDE data, which is significantly better than previously reported results. We perform extensive validation on multiple subsets of the data defined by different inclusion criteria. These enables detailed analysis of the factors contributing to successful connectome-based prediction. First, prediction accuracy improves as we include more subjects, up to the maximum amount of subjects available. Second, the definition of functional brain areas is of paramount importance for biomarker discovery: brain areas extracted from large R-fMRI datasets outperform reference atlases in the classification tasks.

stat.ML↗