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Adrienne Fairhall

Publications and source records attributed to Adrienne Fairhall.

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Adaptive probabilistic neural coding from deterministic spiking neurons: analysis from first principles

A neuron transforms its input into output spikes, and this transformation is the basic unit of computation in the nervous system. The spiking response of the neuron to a complex, time-varying input can be predicted from the detailed biophysical properties of the neuron, modeled as a deterministic nonlinear dynamical system. In the tradition of neural coding, however, a neuron or neural system is treated as a black box and statistical techniques are used to identify functional models of its encoding properties. The goal of this work is to connect the mechanistic, biophysical approach to neuronal function to a description in terms of a coding model. Building from preceding work at the single neuron level, we develop from first principles a mathematical theory mapping the relationships between two simple but powerful classes of models: deterministic integrate-and-fire dynamical models and linear-nonlinear coding models. To do so, we develop an approach for studying a nonlinear dynamical system by conditioning on an observed linear estimator. We derive asymptotic closed-form expressions for the linear filter and estimates for the nonlinear decision function of the linear/nonlinear model. We analytically derive the dependence of the linear filter on the input statistics and we show how deterministic nonlinear dynamics can be used to modulate the properties of a probabilistic code. We demonstrate that integrate-and-fire models without any additional currents can perform perfect contrast gain control, a sophisticated adaptive computation, and we identify the general dynamical principles responsible. We then design from first principles a nonlinear dynamical model that implements gain control. While we focus on the integrate-and-fire models for tractability, the framework we propose to relate LN and dynamical models generalizes naturally to more complex biophysical models.

q-bio.NC

Intrinsic gain modulation and adaptive neural coding

In many cases, the computation of a neural system can be reduced to a receptive field, or a set of linear filters, and a thresholding function, or gain curve, which determines the firing probability; this is known as a linear/nonlinear model. In some forms of sensory adaptation, these linear filters and gain curve adjust very rapidly to changes in the variance of a randomly varying driving input. An apparently similar but previously unrelated issue is the observation of gain control by background noise in cortical neurons: the slope of the firing rate vs current (f-I) curve changes with the variance of background random input. Here, we show a direct correspondence between these two observations by relating variance-dependent changes in the gain of f-I curves to characteristics of the changing empirical linear/nonlinear model obtained by sampling. In the case that the underlying system is fixed, we derive relationships relating the change of the gain with respect to both mean and variance with the receptive fields derived from reverse correlation on a white noise stimulus. Using two conductance-based model neurons that display distinct gain modulation properties through a simple change in parameters, we show that coding properties of both these models quantitatively satisfy the predicted relationships. Our results describe how both variance-dependent gain modulation and adaptive neural computation result from intrinsic nonlinearity.

q-bio.NC

What causes a neuron to spike?

The computation performed by a neuron can be formulated as a combination of dimensional reduction in stimulus space and the nonlinearity inherent in a spiking output. White noise stimulus and reverse correlation (the spike-triggered average and spike-triggered covariance) are often used in experimental neuroscience to `ask' neurons which dimensions in stimulus space they are sensitive to, and to characterize the nonlinearity of the response. In this paper, we apply reverse correlation to the simplest model neuron with temporal dynamics--the leaky integrate-and-fire model--and find that even for this simple case standard techniques do not recover the known neural computation. To overcome this, we develop novel reverse correlation techniques by selectively analyzing only `isolated' spikes, and taking explicit account of the extended silences that precede these isolated spikes. We discuss the implications of our methods to the characterization of neural adaptation. Although these methods are developed in the context of the leaky integrate-and-fire model, our findings are relevant for the analysis of spike trains from real neurons.

physics.bio-ph