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Ahmad Badr

Publications and source records attributed to Ahmad Badr.

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Inferring intraciliary dynamics from the gliding motility of Chlamydomonas reinhardtii

The unicellular microalga Chlamydomonas reinhardtii is widely recognized as a premier model living microswimmer for physicists and biophysicists. However, the interest around C. reinhardtii goes beyond its swimming capabilities. In fact, light can drastically alter its behavior: under blue illumination, the cell attaches to a nearby surface and intermittently glides on it. Such a gliding motility is powered by molecular-motor proteins operating on the cell's cilia, and the related machinery has established the cell as a prime reference for the study of intraciliary-transport mechanisms. This is what we focus on in the present work, by combining in-line holographic microscopy -which leads to unprecedented spatial and temporal resolutions on the gliding dynamics -and statistical inference. We show that, while gliding, the cells exhibit anomalous-diffusive features, including Lorentzian-like distributions of displacements, which are reminiscent of enhanced search strategies. The latter may be exploited by the cells to facilitate colony formation, or, more broadly, by organisms possessing an intraciliary-transport machinery for the transport of cargo molecules and signaling. Furthermore, gliding trajectories, by being intermittent, are valid candidates to infer forces at the molecular-motor scale that are necessary for the cells to move, or symetrically, to transport cargo molecules. We report a gliding threshold of about 20 pN, compatible with the activity of single molecular motors.

cond-mat.soft

Enhanced dispersion of active microswimmers in confined flows

In the presence of a laminar shear flow, the diffusion of passive colloidal particles is enhanced in the direction parallel to the flow. This classical phenomenon is known as Taylor-Aris dispersion. Besides, microorganisms, such as active microswimmers, exhibit an effective diffusive behavior at long times. Combining the two ingredients above, a natural question then emerges on how the effective diffusion of active microswimmers is altered in shear flows -- a widespread situation in natural environments with practical implications, \textit{e.g.} regarding biofilm formation. In this Letter, we investigate the motility and dispersion of \textit{Chlamydomonas reinhardtii} microalgae, within a rectangular microfluidic channel subjected to a sinusoidal Poiseuille flow. Using high-resolution optical microscopy and a particle-tracking algorithm, we reconstruct individual trajectories in various flow conditions and statistically analyze them through moment theory and sliding windowed demodulation. We find that the velocity fluctuations and the dispersion coefficient increase as the flow amplitude is increased, with only weak dependencies on the flow periodicity. Importantly, our results demonstrate that the generalization of Taylor-Aris law to active particles is valid.

cond-mat.stat-mech