arXiv subjects

Ahmed Aly

Publications and source records attributed to Ahmed Aly.

At least 19 recordsLinked to original sources

arXiv2026

EchoSonar-R: A Multi-View Reasoning-Enabled Model for Disease Classification and Report Generation in Echocardiography

Echocardiography is the most widely used non-invasive cardiac imaging modality, providing essential information for cardiovascular diagnosis. Interpreting an echocardiogram requires synthesizing complementary evidence across multiple heart views to identify abnormalities and produce structured clinical reports. While recent efforts focus on improving classification performance, most models lack explicit diagnostic reasoning and spatially grounded anatomical evidence, limiting clinician trust. We present EchoSonar-R, a multi-view reasoning-enabled vision-language model that jointly performs multi-label disease classification and report generation from echocardiography studies. EchoSonar-R combines a spatiotemporal video encoder with a structure-aware cardiac detector that provides spatially grounded anatomical cues to improve interpretability and clinician trust during cross-view reasoning. EchoSonar-R is trained in two stages: supervised fine-tuning (SFT) on reasoning-annotated targets, followed by Group Relative Policy Optimization (GRPO) with task-specific rewards that jointly align classification and report generation within a unified reinforcement-learning framework. Across a private multi-view dataset and two public benchmarks, EchoSonar-R improves macro balanced accuracy by 17.1% on the private set and 6.1% on MIMICEchoQA over the strongest baseline, achieves a GREEN clinical faithfulness score of 0.800, and produces interpretable reasoning traces grounded in multi-view visual evidence.

cs.CV↗

arXiv2026

Atlas is Your Perfect Context: One-Shot Customization for Generalizable Foundational Medical Image Segmentation

Accurate segmentation of anatomical structures in medical images is essential for diagnosis and treatment planning. While recent interactive segmentation foundation models enhance generalization through large-scale multimodal pretraining, they still depend on precise prompts and can fail in underrepresented clinical contexts (e.g., small organs-at-risk). We present AtlasSegFM, an atlas-guided framework that customizes off-the-shelf foundation models to new clinical contexts with a single annotated example. AtlasSegFM 1) performs atlas-query registration to generate context-aware prompts, 2) refines the segmentation with a frozen foundation model, and 3) applies a lightweight adaptive fusion module to combine atlas priors with foundation-model inputs and predictions. Extensive experiments on six public and in-house datasets across radiotherapy and vascular scenarios show consistent gains, with the largest improvements on small and delicate structures. AtlasSegFM provides a lightweight, deployable solution for one-shot customization of segmentation foundation models in real-world clinical workflows.

cs.CV↗

arXiv2026

CardioBench: Do Echocardiography Foundation Models Generalize Beyond the Lab?

Foundation models are reshaping medical imaging, yet their application in echocardiography remains limited, hindered by a heavy reliance on private datasets that prevent reproducible comparison. Echocardiography poses unique challenges, including noisy acquisitions, high frame redundancy, and limited diverse public datasets. To address this, we introduce CardioBench, a comprehensive benchmark for echocardiography foundation models. Specifically, CardioBench unifies eight publicly available datasets into a standardized suite spanning four regression and five classification tasks, covering functional, structural, diagnostic, and view recognition endpoints. Leveraging this framework, we evaluate several leading foundation models, including cardiac-specific, biomedical, and general-purpose encoders, under consistent zero-shot, probing, and alignment protocols. Our analysis reveals that while general-purpose encoders transfer well and often close the gap with probing, they struggle significantly with fine-grained distinctions like view classification and subtle pathology recognition. Results indicate that models capturing temporal cardiac dynamics perform best on functional tasks, while retrieval-based approaches generalize more consistently across datasets. By releasing preprocessing, splits, and public evaluation pipelines, CardioBench establishes a reproducible reference point to guide the architectural design of future echocardiography and possibly other medical imaging foundation models.

cs.CV↗

arXiv2025

MobileLLM-Pro Technical Report

Efficient on-device language models around 1 billion parameters are essential for powering low-latency AI applications on mobile and wearable devices. However, achieving strong performance in this model class, while supporting long context windows and practical deployment remains a significant challenge. We introduce MobileLLM-Pro, a 1-billion-parameter language model optimized for on-device deployment. MobileLLM-Pro achieves state-of-the-art results across 11 standard benchmarks, significantly outperforming both Gemma 3-1B and Llama 3.2-1B, while supporting context windows of up to 128,000 tokens and showing only minor performance regressions at 4-bit quantization. These improvements are enabled by four core innovations: (1) implicit positional distillation, a novel technique that effectively instills long-context capabilities through knowledge distillation; (2) a specialist model merging framework that fuses multiple domain experts into a compact model without parameter growth; (3) simulation-driven data mixing using utility estimation; and (4) 4-bit quantization-aware training with self-distillation. We release our model weights and code to support future research in efficient on-device language models.

cs.LG↗

arXiv2025

CRAG-MM: Multi-modal Multi-turn Comprehensive RAG Benchmark

Wearable devices such as smart glasses are transforming the way people interact with their surroundings, enabling users to seek information regarding entities in their view. Multi-Modal Retrieval-Augmented Generation (MM-RAG) plays a key role in supporting such questions, yet there is still no comprehensive benchmark for this task, especially regarding wearables scenarios. To fill this gap, we present CRAG-MM -- a Comprehensive RAG benchmark for Multi-modal Multi-turn conversations. CRAG-MM contains a diverse set of 6.5K (image, question, answer) triplets and 2K visual-based multi-turn conversations across 13 domains, including 6.2K egocentric images designed to mimic captures from wearable devices. We carefully constructed the questions to reflect real-world scenarios and challenges, including five types of image-quality issues, six question types, varying entity popularity, differing information dynamism, and different conversation turns. We design three tasks: single-source augmentation, multi-source augmentation, and multi-turn conversations -- each paired with an associated retrieval corpus and APIs for both image-KG retrieval and webpage retrieval. Our evaluation shows that straightforward RAG approaches achieve only 32% and 43% truthfulness on CRAG-MM single- and multi-turn QA, respectively, whereas state-of-the-art industry solutions have similar quality (32%/45%), underscoring ample room for improvement. The benchmark has hosted KDD Cup 2025, attracting about 1K participants and 5K submissions, with winning solutions improving baseline performance by 28%, highlighting its early impact on advancing the field.

cs.CV↗

arXiv2025

OCR-APT: Reconstructing APT Stories from Audit Logs using Subgraph Anomaly Detection and LLMs

Advanced Persistent Threats (APTs) are stealthy cyberattacks that often evade detection in system-level audit logs. Provenance graphs model these logs as connected entities and events, revealing relationships that are missed by linear log representations. Existing systems apply anomaly detection to these graphs but often suffer from high false positive rates and coarse-grained alerts. Their reliance on node attributes like file paths or IPs leads to spurious correlations, reducing detection robustness and reliability. To fully understand an attack's progression and impact, security analysts need systems that can generate accurate, human-like narratives of the entire attack. To address these challenges, we introduce OCR-APT, a system for APT detection and reconstruction of human-like attack stories. OCR-APT uses Graph Neural Networks (GNNs) for subgraph anomaly detection, learning behavior patterns around nodes rather than fragile attributes such as file paths or IPs. This approach leads to a more robust anomaly detection. It then iterates over detected subgraphs using Large Language Models (LLMs) to reconstruct multi-stage attack stories. Each stage is validated before proceeding, reducing hallucinations and ensuring an interpretable final report. Our evaluations on the DARPA TC3, OpTC, and NODLINK datasets show that OCR-APT outperforms state-of-the-art systems in both detection accuracy and alert interpretability. Moreover, OCR-APT reconstructs human-like reports that comprehensively capture the attack story.

cs.CR↗

arXiv2025

AssoMem: Scalable Memory QA with Multi-Signal Associative Retrieval

Accurate recall from large scale memories remains a core challenge for memory augmented AI assistants performing question answering (QA), especially in similarity dense scenarios where existing methods mainly rely on semantic distance to the query for retrieval. Inspired by how humans link information associatively, we propose AssoMem, a novel framework constructing an associative memory graph that anchors dialogue utterances to automatically extracted clues. This structure provides a rich organizational view of the conversational context and facilitates importance aware ranking. Further, AssoMem integrates multi-dimensional retrieval signals-relevance, importance, and temporal alignment using an adaptive mutual information (MI) driven fusion strategy. Extensive experiments across three benchmarks and a newly introduced dataset, MeetingQA, demonstrate that AssoMem consistently outperforms SOTA baselines, verifying its superiority in context-aware memory recall.

cs.CL↗

arXiv2025

Stream RAG: Instant and Accurate Spoken Dialogue Systems with Streaming Tool Usage

End-to-end speech-in speech-out dialogue systems are emerging as a powerful alternative to traditional ASR-LLM-TTS pipelines, generating more natural, expressive responses with significantly lower latency. However, these systems remain prone to hallucinations due to limited factual grounding. While text-based dialogue systems address this challenge by integrating tools such as web search and knowledge graph APIs, we introduce the first approach to extend tool use directly into speech-in speech-out systems. A key challenge is that tool integration substantially increases response latency, disrupting conversational flow. To mitigate this, we propose Streaming Retrieval-Augmented Generation (Streaming RAG), a novel framework that reduces user-perceived latency by predicting tool queries in parallel with user speech, even before the user finishes speaking. Specifically, we develop a post-training pipeline that teaches the model when to issue tool calls during ongoing speech and how to generate spoken summaries that fuse audio queries with retrieved text results, thereby improving both accuracy and responsiveness. To evaluate our approach, we construct AudioCRAG, a benchmark created by converting queries from the publicly available CRAG dataset into speech form. Experimental results demonstrate that our streaming RAG approach increases QA accuracy by up to 200% relative (from 11.1% to 34.2% absolute) and further enhances user experience by reducing tool use latency by 20%. Importantly, our streaming RAG approach is modality-agnostic and can be applied equally to typed input, paving the way for more agentic, real-time AI assistants.

cs.CL↗

arXiv2025

Memory-QA: Answering Recall Questions Based on Multimodal Memories

We introduce Memory-QA, a novel real-world task that involves answering recall questions about visual content from previously stored multimodal memories. This task poses unique challenges, including the creation of task-oriented memories, the effective utilization of temporal and location information within memories, and the ability to draw upon multiple memories to answer a recall question. To address these challenges, we propose a comprehensive pipeline, Pensieve, integrating memory-specific augmentation, time- and location-aware multi-signal retrieval, and multi-memory QA fine-tuning. We created a multimodal benchmark to illustrate various real challenges in this task, and show the superior performance of Pensieve over state-of-the-art solutions (up to 14% on QA accuracy).

cs.AI↗

arXiv2025

A Multimodal and Multi-centric Head and Neck Cancer Dataset for Segmentation, Diagnosis and Outcome Prediction

We present a publicly available multimodal dataset for head and neck cancer research, comprising 1123 annotated Positron Emission Tomography/Computed Tomography (PET/CT) studies from patients with histologically confirmed disease, acquired from 10 international medical centers. All studies contain co-registered PET/CT scans with varying acquisition protocols, reflecting real-world clinical diversity from a long-term, multi-institution retrospective collection. Primary gross tumor volumes (GTVp) and involved lymph nodes (GTVn) were manually segmented by experienced radiation oncologists and radiologists following established guidelines. We provide anonymized NifTi files, expert-annotated segmentation masks, comprehensive clinical metadata, and radiotherapy dose distributions for a patient subset. The metadata include TNM staging, HPV status, demographics, long-term follow-up outcomes, survival times, censoring indicators, and treatment information. To demonstrate its utility, we benchmark three key clinical tasks: automated tumor segmentation, recurrence-free survival prediction, and HPV status classification, using state-of-the-art deep learning models like UNet, SegResNet, and multimodal prognostic frameworks.

cs.CV↗

arXiv2025

Language and Planning in Robotic Navigation: A Multilingual Evaluation of State-of-the-Art Models

Large Language Models (LLMs) such as GPT-4, trained on huge amount of datasets spanning multiple domains, exhibit significant reasoning, understanding, and planning capabilities across various tasks. This study presents the first-ever work in Arabic language integration within the Vision-and-Language Navigation (VLN) domain in robotics, an area that has been notably underexplored in existing research. We perform a comprehensive evaluation of state-of-the-art multi-lingual Small Language Models (SLMs), including GPT-4o mini, Llama 3 8B, and Phi-3 medium 14B, alongside the Arabic-centric LLM, Jais. Our approach utilizes the NavGPT framework, a pure LLM-based instruction-following navigation agent, to assess the impact of language on navigation reasoning through zero-shot sequential action prediction using the R2R dataset. Through comprehensive experiments, we demonstrate that our framework is capable of high-level planning for navigation tasks when provided with instructions in both English and Arabic. However, certain models struggled with reasoning and planning in the Arabic language due to inherent limitations in their capabilities, sub-optimal performance, and parsing issues. These findings highlight the importance of enhancing planning and reasoning capabilities in language models for effective navigation, emphasizing this as a key area for further development while also unlocking the potential of Arabic-language models for impactful real-world applications.

cs.CL↗

arXiv2025

CoSMoEs: Compact Sparse Mixture of Experts

Sparse Mixture of Expert (MoE) models are popular foundational architectures at large scale, however, under-explored at smaller sizes. Here, we show how to enable Compact Sparse Mixture of Experts (CoSMoEs) for on-device inference. Specifically, we tackle the three main on-device dimensions: Quality, Memory and Latency. Along the quality axis, we show that in a fair evaluation (removing confounding factors) MoE architectures outperform FLOP-aligned dense models at on-device scale. We introduce weight-decomposed experts, further improving the MoE model performance. Regarding model memory and latency, we significantly improve model offloading efficiency and, in turn, reduce model inference latency.

cs.LG↗

arXiv2024

CoDi: Conversational Distillation for Grounded Question Answering

Distilling conversational skills into Small Language Models (SLMs) with approximately 1 billion parameters presents significant challenges. Firstly, SLMs have limited capacity in their model parameters to learn extensive knowledge compared to larger models. Secondly, high-quality conversational datasets are often scarce, small, and domain-specific. Addressing these challenges, we introduce a novel data distillation framework named CoDi (short for Conversational Distillation, pronounced "Cody"), allowing us to synthesize large-scale, assistant-style datasets in a steerable and diverse manner. Specifically, while our framework is task agnostic at its core, we explore and evaluate the potential of CoDi on the task of conversational grounded reasoning for question answering. This is a typical on-device scenario for specialist SLMs, allowing for open-domain model responses, without requiring the model to "memorize" world knowledge in its limited weights. Our evaluations show that SLMs trained with CoDi-synthesized data achieve performance comparable to models trained on human-annotated data in standard metrics. Additionally, when using our framework to generate larger datasets from web data, our models surpass larger, instruction-tuned models in zero-shot conversational grounded reasoning tasks.

cs.CL↗

arXiv2024

PRoDeliberation: Parallel Robust Deliberation for End-to-End Spoken Language Understanding

Spoken Language Understanding (SLU) is a critical component of voice assistants; it consists of converting speech to semantic parses for task execution. Previous works have explored end-to-end models to improve the quality and robustness of SLU models with Deliberation, however these models have remained autoregressive, resulting in higher latencies. In this work we introduce PRoDeliberation, a novel method leveraging a Connectionist Temporal Classification-based decoding strategy as well as a denoising objective to train robust non-autoregressive deliberation models. We show that PRoDeliberation achieves the latency reduction of parallel decoding (2-10x improvement over autoregressive models) while retaining the ability to correct Automatic Speech Recognition (ASR) mistranscriptions of autoregressive deliberation systems. We further show that the design of the denoising training allows PRoDeliberation to overcome the limitations of small ASR devices, and we provide analysis on the necessity of each component of the system.

cs.CL↗

arXiv2024

Small But Funny: A Feedback-Driven Approach to Humor Distillation

The emergence of Large Language Models (LLMs) has brought to light promising language generation capabilities, particularly in performing tasks like complex reasoning and creative writing. Consequently, distillation through imitation of teacher responses has emerged as a popular technique to transfer knowledge from LLMs to more accessible, Small Language Models (SLMs). While this works well for simpler tasks, there is a substantial performance gap on tasks requiring intricate language comprehension and creativity, such as humor generation. We hypothesize that this gap may stem from the fact that creative tasks might be hard to learn by imitation alone and explore whether an approach, involving supplementary guidance from the teacher, could yield higher performance. To address this, we study the effect of assigning a dual role to the LLM - as a "teacher" generating data, as well as a "critic" evaluating the student's performance. Our experiments on humor generation reveal that the incorporation of feedback significantly narrows the performance gap between SLMs and their larger counterparts compared to merely relying on imitation. As a result, our research highlights the potential of using feedback as an additional dimension to data when transferring complex language abilities via distillation.

cs.CL↗

arXiv2022

Retrieve-and-Fill for Scenario-based Task-Oriented Semantic Parsing

Task-oriented semantic parsing models have achieved strong results in recent years, but unfortunately do not strike an appealing balance between model size, runtime latency, and cross-domain generalizability. We tackle this problem by introducing scenario-based semantic parsing: a variant of the original task which first requires disambiguating an utterance's "scenario" (an intent-slot template with variable leaf spans) before generating its frame, complete with ontology and utterance tokens. This formulation enables us to isolate coarse-grained and fine-grained aspects of the task, each of which we solve with off-the-shelf neural modules, also optimizing for the axes outlined above. Concretely, we create a Retrieve-and-Fill (RAF) architecture comprised of (1) a retrieval module which ranks the best scenario given an utterance and (2) a filling module which imputes spans into the scenario to create the frame. Our model is modular, differentiable, interpretable, and allows us to garner extra supervision from scenarios. RAF achieves strong results in high-resource, low-resource, and multilingual settings, outperforming recent approaches by wide margins despite, using base pre-trained encoders, small sequence lengths, and parallel decoding.

cs.CL↗

arXiv2021

AutoNLU: Detecting, root-causing, and fixing NLU model errors

Improving the quality of Natural Language Understanding (NLU) models, and more specifically, task-oriented semantic parsing models, in production is a cumbersome task. In this work, we present a system called AutoNLU, which we designed to scale the NLU quality improvement process. It adds automation to three key steps: detection, attribution, and correction of model errors, i.e., bugs. We detected four times more failed tasks than with random sampling, finding that even a simple active learning sampling method on an uncalibrated model is surprisingly effective for this purpose. The AutoNLU tool empowered linguists to fix ten times more semantic parsing bugs than with prior manual processes, auto-correcting 65% of all identified bugs.

cs.CL↗

arXiv2021

Span Pointer Networks for Non-Autoregressive Task-Oriented Semantic Parsing

An effective recipe for building seq2seq, non-autoregressive, task-oriented parsers to map utterances to semantic frames proceeds in three steps: encoding an utterance $x$, predicting a frame's length |y|, and decoding a |y|-sized frame with utterance and ontology tokens. Though empirically strong, these models are typically bottlenecked by length prediction, as even small inaccuracies change the syntactic and semantic characteristics of resulting frames. In our work, we propose span pointer networks, non-autoregressive parsers which shift the decoding task from text generation to span prediction; that is, when imputing utterance spans into frame slots, our model produces endpoints (e.g., [i, j]) as opposed to text (e.g., "6pm"). This natural quantization of the output space reduces the variability of gold frames, therefore improving length prediction and, ultimately, exact match. Furthermore, length prediction is now responsible for frame syntax and the decoder is responsible for frame semantics, resulting in a coarse-to-fine model. We evaluate our approach on several task-oriented semantic parsing datasets. Notably, we bridge the quality gap between non-autogressive and autoregressive parsers, achieving 87 EM on TOPv2 (Chen et al. 2020). Furthermore, due to our more consistent gold frames, we show strong improvements in model generalization in both cross-domain and cross-lingual transfer in low-resource settings. Finally, due to our diminished output vocabulary, we observe 70% reduction in latency and 83% reduction in memory at beam size 5 compared to prior non-autoregressive parsers.

cs.CL↗