Searcharxiv⌕ Search

arXiv subjects

Aidan T. Brown

Publications and source records attributed to Aidan T. Brown.

8 recordsLinked to original sources

Spreading dynamics of an infection in a growing population

Bacteriophages spreading through populations of bacteria offer relatively simple, tuneable systems for testing mathematical models of range expansion. However, such models typically assume a static state into which to expand, which is not generally valid for bacterial-bacteriophage populations, where both the host (bacteria) and the infectious agent (bacteriophage) have similar growth rates. Here, we build on the classical FKPP theory of expanding fronts to study an infectious bacteriophage front propagating into an exponentially growing population of bacteria, focusing on the situation where the hosts are also mobile, e.g., swimming bacteria. In this case, both the infectious agent and the infected host populations take on the form of self-similar travelling waves with a fixed wave speed, as in FKPP theory, but the infected host wave also grows exponentially. Depending on the population under consideration, wave speeds are either advanced or retarded compared to the non-growing case. We identify a novel speed selection mechanism in which the shape of the bacteriophage wave controls these various wave speeds. We propose experiments to test our predictions.

cond-mat.soft↗

Encapsulated bacteria deform lipid vesicles into flagellated swimmers

We study a synthetic system of motile Escherichia coli bacteria encapsulated inside giant lipid vesicles. Forces exerted by the bacteria on the inner side of the membrane are sufficient to extrude membrane tubes filled with one or several bacteria. We show that a physical coupling between the membrane tube and the flagella of the enclosed cells transforms the tube into an effective helical flagellum propelling the vesicle. We develop a simple theoretical model to estimate the propulsive force from the speed of the vesicles, and demonstrate the good efficiency of this coupling mechanism. Together, these results point to design principles for conferring motility to synthetic cells.

cond-mat.soft↗

Dynamic optical rectification and delivery of active particles

We use moving light patterns to control the motion of {\it Escherichia coli} bacteria whose motility is photo-activated. Varying the pattern speed controls the magnitude and direction of the bacterial flux, and therefore the accumulation of cells in up- and down-stream reservoirs. We validate our results with two-dimensional simulations and a 1-dimensional analytic model, and use these to explore parameter space. We find that cell accumulation is controlled by a competition between directed flux and undirected, stochastic transport. We articulate design principles for using moving light patterns and light-activated micro-swimmers to achieve particular experimental goals.

cond-mat.soft↗

Probing the spatiotemporal dynamics of catalytic Janus particles with single-particle tracking and differential dynamic microscopy

We demonstrate differential dynamic microscopy and particle tracking for the characterization of the spatiotemporal behavior of active Janus colloids in terms of the intermediate scattering function (ISF). We provide an analytical solution for the ISF of the paradigmatic active Brownian particle model and find striking agreement with experimental results from the smallest length scales, where translational diffusion and self-propulsion dominate, up to the largest ones, which probe effective diffusion due to rotational Brownian motion. At intermediate length scales, characteristic oscillations resolve the crossover between directed motion to orientational relaxation and allow us to discriminate active Brownian motion from other reorientation processes, e.g., run-and-tumble motion. A direct comparison to theoretical predictions reliably yields the rotational and translational diffusion coefficients of the particles, the mean and width of their speed distribution, and the temporal evolution of these parameters.

cond-mat.soft↗

Microfluidic Pumping by Micromolar Salt Concentrations

An ion-exchange-resin-based microfluidic pump is introduced that utilizes trace amounts of ions to generate fluid flows. We show experimentally that our pump operates in almost deionized water for periods exceeding 24h and induces fluid flows of um/s over hundreds of um. This flow displays a far-field, power-law decay which is characteristic of two-dimensional (2D) flow when the system is strongly confined and of three-dimensional (3D) flow when it is not. Using theory and numerical calculations we demonstrate that our observations are consistent with electroosmotic pumping driven by umol/L ion concentrations in the sample cell that serve as 'fuel' to the pump. Our study thus reveals that trace amounts of charge carriers can produce surprisingly strong fluid flows; an insight that should benefit the design of a new class of microfluidic pumps that operate at very low fuel concentrations.

cond-mat.soft↗

Ionic Screening and Dissociation are Crucial for Understanding Chemical Self-Propulsion in Water

Water is a polar solvent and hence supports the bulk dissociation of itself and its solutes into ions, and the re-association of these ions into neutral molecules in a dynamic equilibrium, e.g., ${\rm H_2O_2}\leftrightharpoons {\rm H^+~+~HO_2^-}$. Using continuum theory, we study the influence of these reactions on the self-propulsion of colloids driven by surface chemical reactions (chemical swimmers) in aqueous solution. The association-dissociation reactions are here shown to have a strong influence on the swimmers' behaviour, and must therefore be included in future modelling. In particular, such bulk reactions permit charged swimmers to propel electrophoretically even if all species involved in the surface reactions are neutral. The bulk reactions also significantly modify the predicted speed of chemical swimmers propelled by ionic currents, by up to an order of magnitude. For swimmers whose surface reactions produce both anions and cations (ionic self-diffusiophoresis), the bulk reactions produce an additional reactive screening length, analogous to the Debye length in electrostatics. This in turn leads to an inverse relationship between swimmer radius and swimming speed, which could provide an alternative explanation for recent experimental observations on Pt-polystyrene Janus swimmers [S. Ebbens et al., Phys. Rev. E 85, 020401 (2012)]. We also use our continuum theory to investigate the effect of the Debye screening length itself, going beyond the infinitely thin limit approximation used by previous analytical theories. We identify significant departures from this limiting behavior for micron-sized swimmers under typical experimental conditions, and find that the limiting behavior fails entirely for nanoscale swimmers.

cond-mat.soft↗

Hydrodynamic oscillations and variable swimming speed in squirmers close to repulsive walls

We present a lattice Boltzmann study of the hydrodynamics of a fully resolved squirmer, radius R, confined in a slab of fluid between two no-slip walls. We show that the coupling between hydrodynamics and short-range repulsive interactions between the swimmer and the surface can lead to hydrodynamic trapping of both pushers and pullers at the wall, and to hydrodynamic oscillations in the case of a pusher. We further show that a pusher moves significantly faster when close to a surface than in the bulk, whereas a puller undergoes a transition between fast motion and a dynamical standstill according to the range of the repulsive interaction. Our results critically require near-field hydrodynamics; they further suggest that it should be possible to control density and speed of squirmers at a surface by tuning the range of steric and electrostatic swimmer-wall interactions.

cond-mat.soft↗

Swimming in a Crystal:

We study catalytic Janus swimmers and Escherichia coli bacteria swimming in a two-dimensional colloidal crystal. The Janus swimmers orbit individual colloids and hop between colloids stochastically, with a hopping rate that varies inversely with fuel (hydrogen peroxide) concentration. At high fuel concentration, these orbits are stable for 100s of revolutions, and the orbital speed oscillates periodically as a result of hydrodynamic, and possibly also phoretic, interactions between the swimmer and the six neighbouring colloids. Motile E.~coli bacteria behave very differently in the same colloidal crystal: their circular orbits on plain glass are rectified into long, straight runs, because the bacteria are unable to turn corners inside the crystal.

cond-mat.soft↗