arXiv subjects

Aiden Doherty

Publications and source records attributed to Aiden Doherty.

8 recordsLinked to original sources

arXiv2026

Learning Human Health and Diseases from 24-hour Wrist Movement

Much of human health and function unfolds beyond the clinic, through the movements of everyday life. Wrist-worn accelerometers capture these movements continuously, yet their rich signals are often reduced to a small set of predefined behavioural summary measures. Here, we present Sensori, a self-supervised foundation model that learns general-purpose health representations directly from 24 hours of raw tri-axial wrist movement. We developed and evaluated the model across four population-based cohorts from the United Kingdom, China and the United States, comprising 122,640 participants contributing 683,617 person-days of free-living recordings. Sensori condensed each day of movement into a representation that captured diverse movement behaviours, demographic characteristics, health axes and physical function. Evaluation in independent cohorts showed that these representations generalised across populations and measurement settings without retraining. When added to common clinical covariates, Sensori significantly improved prevalent disease classification for 52 of 102 eligible conditions (median delta AUROC, 0.060; range, 0.012-0.242) and incident disease risk prediction for 26 of 87 eligible conditions (median delta Uno's C-index, 0.064; range, 0.025-0.172), with the largest gains for neurological and psychiatric disorders. These findings establish 24-hour wrist movement as a rich and scalable source of health information, with the potential to support passive health monitoring and disease prediction at population scale.

cs.LG↗

arXiv2026

Generalizable framework of eating episode detection on free-living wrist-worn wearable data

Accurate assessment of eating behavior is essential for understanding and managing conditions such as eating disorders, obesity, and diabetes. Wearable-based food intake detection has shown considerable promise; however, most existing approaches are trained and evaluated using internal validation on a single dataset with fixed sensor orientation and known wearing hand, which limits their generalizability to real-world settings. Furthermore, many existing approaches rely on both accelerometer (acc) and gyroscope (gyro) signals to achieve strong performance. However, gyro measurements may be unavailable in some real-world deployments due to battery constraints, and performance often degrades when only acc data are used. We propose a generalizable framework for orientation-invariant eating episode detection, with an acc2gyro module to improve performance in acc-only settings. The framework is trained using fine-grained wrist-worn datasets and externally validated across three heterogeneous datasets: the Clemson All-Day (CAD) and Capture-24 datasets, as well as Physio-ED, a dataset collected from individuals with eating disorders. Across external evaluations, the proposed framework demonstrates robust performance despite substantial variations in sensor modality, wearing hand, participant population, and annotation protocols. Specifically, the framework achieved F1-scores of 0.751, 0.592, and 0.793 on CAD, Capture-24, and Physio-ED, respectively, with CAD performance exceeding recent state-of-the-art methods evaluated using internal validation only. This study provides the first external validation of eating episode detection in an eating disorder population. Additionally, the acc2gyro module improves the performance in acc-only settings. These findings demonstrate the potential of orientation-invariant wearable sensing for scalable and clinically applicable assessment of eating behavior.

eess.SP↗

arXiv2026

Motion Capture is Not the Target Domain: Scaling Synthetic Data for Learning Motion Representations

Synthetic data offers a compelling path to scalable pretraining when real-world data is scarce, but models pretrained on synthetic data often fail to transfer reliably to deployment settings. We study this problem in full-body human motion, where large-scale data collection is infeasible but essential for wearable-based Human Activity Recognition (HAR), and where synthetic motion can be generated from motion-capture-derived representations. We pretrain motion time-series models using such synthetic data and evaluate their transfer across diverse downstream HAR tasks. Our results show that synthetic pretraining improves generalisation when mixed with real data or scaled sufficiently. We also demonstrate that large-scale motion-capture pretraining yields only marginal gains due to domain mismatch with wearable signals, clarifying key sim-to-real challenges and the limits and opportunities of synthetic motion data for transferable HAR representations.

cs.LG↗

arXiv2025

ActiNet: An Open-Source Tool for Activity Intensity Classification of Wrist-Worn Accelerometry Using Self-Supervised Deep Learning

The use of accurate and reliable open-source human activity recognition (HAR) models on passively collected wrist-accelerometer data is essential in large-scale epidemiological studies that investigate the association between physical activity and health outcomes. While self-supervised learning has generated considerable excitement in improving HAR, the extent to which these models, coupled with hidden Markov models (HMMs), would make a tangible improvement to classification performance and the effect this may have on the predicted daily activity intensity compositions is unknown. Using up to 24 hours of wrist-worn accelerometer data from 151 CAPTURE-24 participants (aged 18 - 91, mean age 42, 66% female), we trained the ActiNet model, consisting HARNet, a self-supervised, 18-layer, modified ResNet-V2 model, followed by hidden Markov model (HMM) smoothing to classify labels of activity intensity. The performance of this model, evaluated using 5-fold stratified group cross-validation, was then compared to a baseline random forest (RF) + HMM, established in existing literature. Differences in performance and classification outputs were compared with different subgroups of age and sex within the CAPTURE-24 population. The ActiNet model was able to distinguish labels of activity intensity with a mean macro F1 score of 0.82 and a mean Cohen's kappa score of 0.86. This exceeded the performance of the RF + HMM, trained and validated on the same dataset, with mean scores of 0.76 and 0.80, respectively. The improvements in performance were consistent across subgroups of age and sex. These findings encourage the use of ActiNet for the extraction of activity intensity labels from wrist-accelerometer data in future epidemiological studies.

cs.LG↗

arXiv2025

Reducing Annotation Burden in Physical Activity Research Using Vision-Language Models

Introduction: Data from wearable devices collected in free-living settings, and labelled with physical activity behaviours compatible with health research, are essential for both validating existing wearable-based measurement approaches and developing novel machine learning approaches. One common way of obtaining these labels relies on laborious annotation of sequences of images captured by cameras worn by participants through the course of a day. Methods: We compare the performance of three vision language models and two discriminative models on two free-living validation studies with 161 and 111 participants, collected in Oxfordshire, United Kingdom and Sichuan, China, respectively, using the Autographer (OMG Life, defunct) wearable camera. Results: We found that the best open-source vision-language model (VLM) and fine-tuned discriminative model (DM) achieved comparable performance when predicting sedentary behaviour from single images on unseen participants in the Oxfordshire study; median F1-scores: VLM = 0.89 (0.84, 0.92), DM = 0.91 (0.86, 0.95). Performance declined for light (VLM = 0.60 (0.56,0.67), DM = 0.70 (0.63, 0.79)), and moderate-to-vigorous intensity physical activity (VLM = 0.66 (0.53, 0.85); DM = 0.72 (0.58, 0.84)). When applied to the external Sichuan study, performance fell across all intensity categories, with median Cohen's kappa-scores falling from 0.54 (0.49, 0.64) to 0.26 (0.15, 0.37) for the VLM, and from 0.67 (0.60, 0.74) to 0.19 (0.10, 0.30) for the DM. Conclusion: Freely available computer vision models could help annotate sedentary behaviour, typically the most prevalent activity of daily living, from wearable camera images within similar populations to seen data, reducing the annotation burden.

cs.CV↗

arXiv2024

CAPTURE-24: A large dataset of wrist-worn activity tracker data collected in the wild for human activity recognition

Existing activity tracker datasets for human activity recognition are typically obtained by having participants perform predefined activities in an enclosed environment under supervision. This results in small datasets with a limited number of activities and heterogeneity, lacking the mixed and nuanced movements normally found in free-living scenarios. As such, models trained on laboratory-style datasets may not generalise out of sample. To address this problem, we introduce a new dataset involving wrist-worn accelerometers, wearable cameras, and sleep diaries, enabling data collection for over 24 hours in a free-living setting. The result is CAPTURE-24, a large activity tracker dataset collected in the wild from 151 participants, amounting to 3883 hours of accelerometer data, of which 2562 hours are annotated. CAPTURE-24 is two to three orders of magnitude larger than existing publicly available datasets, which is critical to developing accurate human activity recognition models.

cs.HC↗

arXiv2022

Self-supervised Learning for Human Activity Recognition Using 700,000 Person-days of Wearable Data

Advances in deep learning for human activity recognition have been relatively limited due to the lack of large labelled datasets. In this study, we leverage self-supervised learning techniques on the UK-Biobank activity tracker dataset--the largest of its kind to date--containing more than 700,000 person-days of unlabelled wearable sensor data. Our resulting activity recognition model consistently outperformed strong baselines across seven benchmark datasets, with an F1 relative improvement of 2.5%-100% (median 18.4%), the largest improvements occurring in the smaller datasets. In contrast to previous studies, our results generalise across external datasets, devices, and environments. Our open-source model will help researchers and developers to build customisable and generalisable activity classifiers with high performance.

eess.SP↗

arXiv2018

Semi-unsupervised Learning of Human Activity using Deep Generative Models

We introduce 'semi-unsupervised learning', a problem regime related to transfer learning and zero-shot learning where, in the training data, some classes are sparsely labelled and others entirely unlabelled. Models able to learn from training data of this type are potentially of great use as many real-world datasets are like this. Here we demonstrate a new deep generative model for classification in this regime. Our model, a Gaussian mixture deep generative model, demonstrates superior semi-unsupervised classification performance on MNIST to model M2 from Kingma and Welling (2014). We apply the model to human accelerometer data, performing activity classification and structure discovery on windows of time series data.

stat.ML↗