SearcharxivSearch

arXiv subjects

Aiichiro Nakano

Publications and source records attributed to Aiichiro Nakano.

At least 19 recordsLinked to original sources

EquiFiLM: Charge-Conditioned Equivariant Force Fields via Feature-wise Linear Modulation

Foundation machine learning force fields (MLFFs) such as MACE-MP-0 and UMA cover broad chemical space at near density functional theory (DFT) accuracy. However, they assume equilibrium ground-state physics and do not natively handle externally induced changes to the electronic state, such as charging, applied fields, or electronic excitation, which limits their use for driven processes such as photoexcitation and charge injection. We propose EquiFiLM, a lightweight extension that adds continuous external conditioning to any equivariant foundation MLFF via a per-layer Feature-wise Linear Modulation (FiLM) block, learning externally driven changes to the potential energy surface from minimal training data. The block modulates only scalar channels and preserves E(3)-equivariance exactly. We demonstrate the recipe on charged liquid water with the foundation model MACE-MatPES as the backbone, yielding E-MACE. On the four training charges, E-MACE delivers a $3.1\times$ reduction in force RMSE ($21.3$ to $6.96$ meV/$\mathring{A}$) and a $61\times$ reduction in per-atom energy RMSE ($6.1$ to $0.1$ meV/atom) over a baseline without EquiFiLM trained on the same data, at indistinguishable inference cost. Across seven held-out interpolation and extrapolation charges, force RMSE stays within $18-61$ meV/$\mathring{A}$ and energy RMSE within $0.7-5.4$ meV/atom. The model runs stable molecular dynamics across the full range tested and predicts the charge-dependent first-shell response of the reduced pair distribution function probed by ultrafast electron diffraction. Adding this conditioning axis to the foundation requires only a few thousand DFT-labeled frames, against the $\approx 10^8$ structures of a charge-aware foundation trained from scratch. The recipe is backbone- and conditioning-agnostic: it applies without architectural change to any equivariant MLFF with scalar interaction-layer channels.

cs.LG

Toward Exascale AI for Science: A Scalable AI Skill for Autonomous Microkinetics Discovery

We present a scalable AI-driven framework that advances autonomous scientific discovery by combining agentic workflow automation, high-performance computing, and scientific surrogate models. Using microkinetics discovery as a testbed, the work demonstrates how AI can reduce expert intervention, recover from failed simulations, and systematically evaluate surrogate model reliability. This study shows how AI skills can transform complex domain workflows into robust, scalable capabilities for next-generation materials research.

cs.CE

Dynamics of Majorana Fermions on a Quantum Computer

The study of quasiparticle dynamics is central to understanding non-equilibrium phenomena in quantum many-body systems. Direct simulation of such dynamics on quantum hardware has been limited by circuit depth and noise constraints. In this work, we use a recently developed constant-depth circuit algorithm to examine the real-time evolution of site-resolved magnetization in a transverse-field Ising chain on noisy intermediate-scale quantum devices. By representing each spin as a pair of Majorana fermions, we identify two distinct dynamical regimes governed by the relative strength of spin interaction. Furthermore, we show how local impurities can serve as probes of Majorana modes, acting as dynamical barriers in the weak coupling regime. These results demonstrate that constant-depth quantum circuits provide a viable route for studying quasiparticle propagation and for probing Majorana signatures on currently available quantum processors.

cond-mat.str-el

Emerging Ferroelectric Domains: Stacking and Rotational Landscape of MoS2 Moire Bilayers

The structures and properties of moire patterns in twisted bilayers of two-dimensional (2D) materials are known to depend sensitively on twist angle, yet their dependence on stacking order remains comparatively underexplored. In this study, we use molecular dynamics simulations to systematically investigate the combined effects of stacking order and rotation in MoS2 bilayers. Beginning from five well-established high-symmetry bilayer stackings, we apply twist angles between 1 and 120 to the top layer, revealing a variety of relaxed moire structures. Our results show that the initial stacking significantly influences the moire domain configurations that emerge at a given twist angle. While all five stacking orders are metastable without twist, they form two moire-equivalent classes- AA/AB and AA',A'B,AB', i.e., for a given twist angle, structures within each class relax to the same moire configuration. Specifically, initial AA and AB stackings give rise to triangular ferroelectric domains near 0+/-3, while AA', A'B, and AB' stackings produce triangular ferroelectric domains near 60+/-3. At precisely 60 and 120 twists, the bilayers relax to into pure high-symmetry stackings, highlighting the rotational relationships between these configurations and explaining the shift of 60 in the ferroelectric rotational range. These findings demonstrate the critical role of stacking order in governing the rich moire landscapes accessible in twistronic systems.

cond-mat.mtrl-sci

Multiscale light-matter dynamics in quantum materials: from electrons to topological superlattices

Light-matter dynamics in topological quantum materials enables ultralow-power, ultrafast devices. A challenge is simulating multiple field and particle equations for light, electrons, and atoms over vast spatiotemporal scales on Exaflop/s computers with increased heterogeneity and low-precision focus. We present a paradigm shift that solves the multiscale/multiphysics/heterogeneity challenge harnessing hardware heterogeneity and low-precision arithmetic. Divide-conquer-recombine algorithms divide the problem into not only spatial but also physical subproblems of small dynamic ranges and minimal mutual information, which are mapped onto best-characteristics-matching hardware units, while metamodel-space algebra minimizes communication and precision requirements. Using 60,000 GPUs of Aurora, DC-MESH (divide-and-conquer Maxwell-Ehrenfest-surface hopping) and XS-NNQMD (excited-state neural-network quantum molecular dynamics) modules of MLMD (multiscale light-matter dynamics) software were 152- and 3,780-times faster than the state-of-the-art for 15.4 million-electron and 1.23 trillion-atom PbTiO3 material, achieving 1.87 EFLOP/s for the former. This enabled the first study of light-induced switching of topological superlattices for future ferroelectric 'topotronics'.

physics.comp-ph

Beyond Scaling: Chemical Intuition as Emergent Ability of Universal Machine Learning Interatomic Potentials

Machine Learning Interatomic Potentials (MLIPs) have successfully demonstrated scaling behavior, i.e. the power-law improvement in training performance, however the emergence of novel capabilities at scale remains unexplored. We have developed Edge-wise Emergent Decomposition (E3D) framework to investigate how an MLIP develops the ability to derive physically meaningful local representations of chemical bonds without explicit supervision. Employing an E(3)-equivariant network (Allegro) trained on molecular data (SPICE~2), we found that the trained MLIP spontaneously learned representations of bond dissociation energy (BDE) by decomposing the global potential energy landscape. The learned BDE values quantitatively agree with literature and its scalability are found to be robust across diverse training datasets, suggesting the presence of underlying representation that captures chemical reactions faithfully beyond given training information. Our E3D analysis utilizing Shannon's entropy reveals a close interplay between the decomposability of potential energy learning, scalability of learning, and emergent chemical reactivity, thus providing novel insights of scaling limitations and pathways toward more physically interpretable and predictive simulations.

cond-mat.mtrl-sci

Allegro-FM: Towards Equivariant Foundation Model for Exascale Molecular Dynamics Simulations

We present a foundation model for exascale molecular dynamics simulations by leveraging an E(3) equivariant network architecture (Allegro) and a set of large-scale organic and inorganic materials datasets merged by Total Energy Alignment (TEA) framework. Thanks to the large-scale training sets, the obtained model (Allegro-FM) is versatile for various materials simulations for diverse downstream tasks covering 89 elements in the periodic table. Allegro-FM exhibits excellent agreements with high-level quantum chemistry theories in describing structural, mechanical, and thermodynamic properties, while exhibiting emergent capabilities for structural correlations, reaction kinetics, mechanical strengths, fracture, and solid/liquid dissolution, for which the model has not been trained. Furthermore, we demonstrate the robust predictability and generalizability of Allegro-FM for chemical reactions using the Transition1x that consists of 10k organic reactions and 9.6 million configurations including transition state data, as well as calcium silicate hydrates as a testbed. With its computationally efficient, strictly-local network architecture, Allegro-FM scales up to multi-billion-atom systems with a parallel efficiency of 0.964 on the exaflop/s Aurora supercomputer at Argonne Leadership Computing Facility. The approach presented in this work demonstrates the potential of the foundation model for a novel materials design and discovery based on large-scale atomistic simulations.

cond-mat.mtrl-sci

Generative AI-driven forecasting of oil production

Forecasting oil production from oilfields with multiple wells is an important problem in petroleum and geothermal energy extraction, as well as energy storage technologies. The accuracy of oil forecasts is a critical determinant of economic projections, hydrocarbon reserves estimation, construction of fluid processing facilities, and energy price fluctuations. Leveraging generative AI techniques, we model time series forecasting of oil and water productions across four multi-well sites spanning four decades. Our goal is to effectively model uncertainties and make precise forecasts to inform decision-making processes at the field scale. We utilize an autoregressive model known as TimeGrad and a variant of a transformer architecture named Informer, tailored specifically for forecasting long sequence time series data. Predictions from both TimeGrad and Informer closely align with the ground truth data. The overall performance of the Informer stands out, demonstrating greater efficiency compared to TimeGrad in forecasting oil production rates across all sites.

cs.LG

Dynamics of Symmetry-Protected Topological Matter on a Quantum Computer

Control of topological edge modes is desirable for encoding quantum information resiliently against external noise. Their implementation on quantum hardware, however, remains a long-standing problem due to current limitations of circuit depth and noise, which grows with the number of time steps. By utilizing recently developed constant-depth quantum circuits in which the circuit depth is independent of time, we demonstrate successful long-time dynamics simulation of bulk and surface modes in topological insulators on noisy intermediate-scale quantum (NISQ) processors, which exhibits robust signatures of localized topological modes. We further identify a class of one-dimensional topological Hamiltonians that can be readily simulated with NISQ hardware. Our results provide a pathway towards stable long-time implementation of topological quantum spin systems on present day quantum processors.

quant-ph

Catalysis in Extreme Field Environments: The Case of Strongly Ionized $SiO_{2}$ Nanoparticle Surfaces

High electric fields can significantly alter catalytic environments and the resultant chemical processes. Such fields arise naturally in biological systems but can also be artificially induced through localized excitations at nanoscale. Recently, strong field excitation of dielectric nanoparticles has emerged as an avenue for studying catalysis in highly ionized environments producing extreme electric fields. While the dynamics of surface ion emission driven by ultrafast laser ionization has been heavily explored, understanding the molecular dynamics leading to fragmentation has remained elusive. To address this, we employed a multiscale approach utilizing non-adiabatic quantum molecular dynamics (NAQMD) simulations on hydrogenated silica surfaces in both bare and wetted environments under field conditions mimicking those of an ionized nanoparticle. Our findings indicate that hole localization drives fragmentation dynamics, leading to surface silanol dissociation within 50 fs and charge transfer-induced water splitting in wetted environments within 150 fs. Further insight into such ultrafast mechanisms is critical for advancement of catalysis on the surface of charged nanosystems.

physics.chem-ph

Tracking Surface Charge Dynamics on Single Nanoparticles

Surface charges play a fundamental role in physics and chemistry, particularly in shaping the catalytic properties of nanomaterials. Tracking nanoscale surface charge dynamics remains challenging due to the involved length and time scales. Here, we demonstrate real-time access to the nanoscale charge dynamics on dielectric nanoparticles employing reaction nanoscopy. We present a four-dimensional visualization of the non-linear charge dynamics on strong-field irradiated single SiO$_2$ nanoparticles with femtosecond-nanometer resolution and reveal how surface charges affect surface molecular bonding with quantum dynamical simulations. We performed semi-classical simulations to uncover the roles of diffusion and charge loss in the surface charge redistribution process. Understanding nanoscale surface charge dynamics and its influence on chemical bonding on a single nanoparticle level unlocks an increased ability to address global needs in renewable energy and advanced healthcare.

cond-mat.mes-hall

Molecular Autonomous Pathfinder using Deep Reinforcement Learning

Diffusion in solids is a slow process that dictates rate-limiting processes in key chemical reactions. Unlike crystalline solids that offer well-defined diffusion pathways, the lack of similar structural motifs in amorphous or glassy materials poses a great scientific challenge in estimating slow diffusion time. To tackle this problem, we have developed an AI-guided long-time atomistic simulation approach: Molecular Autonomous Pathfinder (MAP) framework based on Deep Reinforcement Learning (RL), where RL agent is trained to uncover energy efficient diffusion pathways. We employ Deep Q-Network architecture with distributed prioritized replay buffer enabling fully online agent training with accelerated experience sampling by an ensemble of asynchronous agents. After training, the agents provide atomistic configurations of diffusion pathways with their energy profile. We use a piecewise Nudged Elastic Band to refine the energy profile of the obtained pathway and corresponding diffusion time on the basis of transition state theory. With MAP, we have successfully identified atomistic mechanisms along molecular diffusion pathways in amorphous silica, with time scales comparable to experiments.

cond-mat.mtrl-sci

Allegro-Legato: Scalable, Fast, and Robust Neural-Network Quantum Molecular Dynamics via Sharpness-Aware Minimization

Neural-network quantum molecular dynamics (NNQMD) simulations based on machine learning are revolutionizing atomistic simulations of materials by providing quantum-mechanical accuracy but orders-of-magnitude faster, illustrated by ACM Gordon Bell prize (2020) and finalist (2021). State-of-the-art (SOTA) NNQMD model founded on group theory featuring rotational equivariance and local descriptors has provided much higher accuracy and speed than those models, thus named Allegro (meaning fast). On massively parallel supercomputers, however, it suffers a fidelity-scaling problem, where growing number of unphysical predictions of interatomic forces prohibits simulations involving larger numbers of atoms for longer times. Here, we solve this problem by combining the Allegro model with sharpness aware minimization (SAM) for enhancing the robustness of model through improved smoothness of the loss landscape. The resulting Allegro-Legato (meaning fast and "smooth") model was shown to elongate the time-to-failure $t_\textrm{failure}$, without sacrificing computational speed or accuracy. Specifically, Allegro-Legato exhibits much weaker dependence of timei-to-failure on the problem size, $t_{\textrm{failure}} \propto N^{-0.14}$ ($N$ is the number of atoms) compared to the SOTA Allegro model $\left(t_{\textrm{failure}} \propto N^{-0.29}\right)$, i.e., systematically delayed time-to-failure, thus allowing much larger and longer NNQMD simulations without failure. The model also exhibits excellent computational scalability and GPU acceleration on the Polaris supercomputer at Argonne Leadership Computing Facility. Such scalable, accurate, fast and robust NNQMD models will likely find broad applications in NNQMD simulations on emerging exaflop/s computers, with a specific example of accounting for nuclear quantum effects in the dynamics of ammonia.

cs.DC

Pressure-Dependent Layer-by-Layer Oxidation of ZrS2(001) Surface

Understanding oxidation mechanisms of layered semiconducting transition-metal dichalcogenide (TMDC) is important not only for controlling native oxide formation but also for synthesis of oxide and oxysulfide products. Here, reactive molecular dynamics simulations show that oxygen partial pressure controls not only the ZrS2 oxidation rate but also the oxide morphology and quality. We find a transition from layer-by-layer oxidation to amorphous-oxide-mediated continuous oxidation as the oxidation progresses, where different pressures selectively expose different oxidation stages within a given time window. While the kinetics of the fast continuous oxidation stage is well described by the conventional Deal-Grove model, the layer-by-layer oxidation stage is dictated by reactive bond-switching mechanisms. This work provides atomistic details and a potential foundation for rational pressure-controlled oxidation of broad TMDC materials.

cond-mat.mtrl-sci

Multiscale Graph Neural Networks for Protein Residue Contact Map Prediction

Machine learning (ML) is revolutionizing protein structural analysis, including an important subproblem of predicting protein residue contact maps, i.e., which amino-acid residues are in close spatial proximity given the amino-acid sequence of a protein. Despite recent progresses in ML-based protein contact prediction, predicting contacts with a wide range of distances (commonly classified into short-, medium- and long-range contacts) remains a challenge. Here, we propose a multiscale graph neural network (GNN) based approach taking a cue from multiscale physics simulations, in which a standard pipeline involving a recurrent neural network (RNN) is augmented with three GNNs to refine predictive capability for short-, medium- and long-range residue contacts, respectively. Test results on the ProteinNet dataset show improved accuracy for contacts of all ranges using the proposed multiscale RNN+GNN approach over the conventional approach, including the most challenging case of long-range contact prediction.

q-bio.QM

Probing the presence and absence of metal-fullerene electron transfer reactions in helium nanodroplets by deflection measurements

Metal-fullerene compounds are characterized by significant electron transfer to the fullerene cage, giving rise to an electric dipole moment. We use the method of electrostatic beam deflection to verify whether such reactions take place within superfluid helium nanodroplets between an embedded C$_{60}$ molecule and either alkali (heliophobic) or rare-earth (heliophilic) atoms. The two cases lead to distinctly different outcomes: C$_{60}$Na$_n$ ($n$=1-4) display no discernible dipole moment, while C$_{60}$Yb is strongly polar. This suggests that the fullerene and small alkali clusters fail to form a charge-transfer bond in the helium matrix despite their strong van der Waals attraction. The C$_{60}$Yb dipole moment, on the other hand, is in agreement with the value expected for an ionic complex.

physics.atm-clus

MISTIQS: An open-source software for performing quantum dynamics simulations on quantum computers

We present MISTIQS, a Multiplatform Software for Time-dependent Quantum Simulations. MISTIQS delivers end-to-end functionality for simulating the quantum many-body dynamics of systems governed by time-dependent Heisenberg Hamiltonians across multiple quantum computing platforms. It provides high-level programming functionality for generating intermediate representations of quantum circuits which can be translated into a variety of industry-standard representations. Furthermore, it offers a selection of circuit compilation and optimization methods and facilitates execution of the quantum circuits on currently available cloud-based quantum computing backends. MISTIQS serves as an accessible and highly flexible research and education platform, allowing a broader community of scientists and students to perform quantum many-body dynamics simulations on current quantum computers.

quant-ph

Physics-informed Neural-Network Software for Molecular Dynamics Applications

We have developed a novel differential equation solver software called PND based on the physics-informed neural network for molecular dynamics simulators. Based on automatic differentiation technique provided by Pytorch, our software allows users to flexibly implement equation of atom motions, initial and boundary conditions, and conservation laws as loss function to train the network. PND comes with a parallel molecular dynamics (MD) engine in order for users to examine and optimize loss function design, and different conservation laws and boundary conditions, and hyperparameters, thereby accelerate the PINN-based development for molecular applications.

physics.chem-ph