arXiv subjects

Aisling J. Daly

Publications and source records attributed to Aisling J. Daly.

5 recordsLinked to original sources

arXiv2026

Modification speed and radius of higher-order interactions alter the oscillatory dynamics in an agent-based model

Understanding the population dynamics of ecological systems is crucial for predicting shifts in biodiversity and ensuring the protection of these systems. Established models often focus on pairwise species interactions, yet recent studies have highlighted the importance of higher-order interactions (HOIs) in shaping community structure and function. In this study, we investigate the effects of HOIs in an agent-based model with three species engaged in intransitive competition. We introduce an HOI where one species modifies the competition between the other two. We explore the impact of the strength, radius of influence, and speed of this interaction modification on species abundances and oscillations thereof. Our results show that these abundances are not only greatly impacted by the strength, but also by the radius and speed of the interaction modification. A deeper investigation demonstrates that the changes in the oscillations are caused by the interaction modification itself, and not the change in pairwise interaction strength caused by the HOI. These results emphasize the importance of considering the spatio-temporal scales of higher-order interactions when assessing ecosystem stability, highlighting that such interactions can introduce complex dynamical behaviors that go beyond the predictions of traditional pairwise or simpler higher-order models

q-bio.PE↗

arXiv2024

A Comprehensive Taxonomy of Cellular Automata

Cellular automata (CAs) are fully-discrete dynamical models that have received much attention due to the fact that their relatively simple setup can nonetheless express highly complex phenomena. Despite the model's theoretical maturity and abundant computational power, the current lack of a complete survey on the 'taxonomy' of various families of CAs impedes efficient and interdisciplinary progress. This review paper mitigates that deficiency; it provides a methodical overview of five important CA 'families': asynchronous, stochastic, multi-state, extended-neighbourhood, and non-uniform CAs. These five CA families are subsequently presented from four angles. First, a rigorous mathematical definition is given. Second, we map prominent variations within each CA family, as such highlighting mathematical equivalences with types from other families. Third, we discuss the genotype and phenotype of these CA types by means of mathematical tools, indicating when established tools break down. Fourth, we conclude each section with a brief overview of applications related to information theory and mathematical modelling.

nlin.CG↗

arXiv2024

Efficient Simulation of Non-uniform Cellular Automata with a Convolutional Neural Network

Cellular automata (CAs) and convolutional neural networks (CNNs) are closely related due to the local nature of information processing. The connection between these topics is beneficial to both related fields, for conceptual as well as practical reasons. Our contribution solidifies this connection in the case of non-uniform CAs (nuCAs), simulating a global update in the architecture of the Python package TensorFlow. Additionally, we demonstrate how the highly optimised out-of-the-box multiprocessing in TensorFlow offers interesting computational benefits, especially when simulating large numbers of nuCAs with many cells.

nlin.CG↗

arXiv2024

Convolutional Neural Networks for Automated Cellular Automaton Classification

The emergent dynamics in spacetime diagrams of cellular automata (CAs) is often organised by means of a number of behavioural classes. Whilst classification of elementary CAs is feasible and well-studied, non-elementary CAs are generally too diverse and numerous to exhaustively classify manually. In this chapter we treat the spacetime diagram as a digital image, and implement simple computer vision techniques to perform an automated classification of elementary cellular automata into the five Li-Packard classes. In particular, we present a supervised learning task to a convolutional neural network, in such a way that it may be generalised to non-elementary CAs. If we want to do so, we must divert the algorithm's focus away from the underlying 'microscopic' local updates. We first show that previously developed deep learning approaches have in fact been trained to identify the local update rule, rather than directly focus on the mesoscopic patterns that are associated with the particular behavioural classes. By means of a well-argued neural network design, as well as a number of data augmentation techniques, we then present a convolutional neural network that performs nearly perfectly at identifying the behavioural class, without necessarily first identifying the underlying microscopic dynamics.

nlin.CG↗

arXiv2024

Modification speed alters stability of ecological higher-order interaction networks

Higher-order interactions (HOIs) have the potential to greatly increase our understanding of ecological interaction networks beyond what is possible with established models that usually consider only pairwise interactions between organisms. While equilibrium values of such HOI-based models have been studied, the dynamics of these models and the stability of their equilibria remain underexplored. Here we present a novel investigation on the effect of the onset speed of a higher-order interaction. In particular, we study the stability of the equilibrium of all configurations of a three-species interaction network, including transitive as well as intransitive ones. We show that the HOI onset speed has a dramatic effect on the evolution and stability of the ecological network, with significant structural changes compared to commonly used HOI extensions or pairwise networks. Changes in the HOI onset speed from fast to slow can reverse the stability of the interaction network. The evolution of the system also affects the equilibrium that will be reached, influenced by the HOI onset speed. This implies that the HOI onset speed is an important determinant in the dynamics of ecological systems, and including it in models of ecological networks can improve our understanding thereof.

math.DS↗