arXiv subjects

Alan L. Yuille

Publications and source records attributed to Alan L. Yuille.

At least 73 records · Page 4Linked to original sources

arXiv2018

Abdominal multi-organ segmentation with organ-attention networks and statistical fusion

Accurate and robust segmentation of abdominal organs on CT is essential for many clinical applications such as computer-aided diagnosis and computer-aided surgery. But this task is challenging due to the weak boundaries of organs, the complexity of the background, and the variable sizes of different organs. To address these challenges, we introduce a novel framework for multi-organ segmentation by using organ-attention networks with reverse connections (OAN-RCs) which are applied to 2D views, of the 3D CT volume, and output estimates which are combined by statistical fusion exploiting structural similarity. OAN is a two-stage deep convolutional network, where deep network features from the first stage are combined with the original image, in a second stage, to reduce the complex background and enhance the discriminative information for the target organs. RCs are added to the first stage to give the lower layers semantic information thereby enabling them to adapt to the sizes of different organs. Our networks are trained on 2D views enabling us to use holistic information and allowing efficient computation. To compensate for the limited cross-sectional information of the original 3D volumetric CT, multi-sectional images are reconstructed from the three different 2D view directions. Then we combine the segmentation results from the different views using statistical fusion, with a novel term relating the structural similarity of the 2D views to the original 3D structure. To train the network and evaluate results, 13 structures were manually annotated by four human raters and confirmed by a senior expert on 236 normal cases. We tested our algorithm and computed Dice-Sorensen similarity coefficients and surface distances for evaluating our estimates of the 13 structures. Our experiments show that the proposed approach outperforms 2D- and 3D-patch based state-of-the-art methods.

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arXiv2018

Recurrent Saliency Transformation Network: Incorporating Multi-Stage Visual Cues for Small Organ Segmentation

We aim at segmenting small organs (e.g., the pancreas) from abdominal CT scans. As the target often occupies a relatively small region in the input image, deep neural networks can be easily confused by the complex and variable background. To alleviate this, researchers proposed a coarse-to-fine approach, which used prediction from the first (coarse) stage to indicate a smaller input region for the second (fine) stage. Despite its effectiveness, this algorithm dealt with two stages individually, which lacked optimizing a global energy function, and limited its ability to incorporate multi-stage visual cues. Missing contextual information led to unsatisfying convergence in iterations, and that the fine stage sometimes produced even lower segmentation accuracy than the coarse stage. This paper presents a Recurrent Saliency Transformation Network. The key innovation is a saliency transformation module, which repeatedly converts the segmentation probability map from the previous iteration as spatial weights and applies these weights to the current iteration. This brings us two-fold benefits. In training, it allows joint optimization over the deep networks dealing with different input scales. In testing, it propagates multi-stage visual information throughout iterations to improve segmentation accuracy. Experiments in the NIH pancreas segmentation dataset demonstrate the state-of-the-art accuracy, which outperforms the previous best by an average of over 2%. Much higher accuracies are also reported on several small organs in a larger dataset collected by ourselves. In addition, our approach enjoys better convergence properties, making it more efficient and reliable in practice.

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arXiv2018

Single-Shot Object Detection with Enriched Semantics

We propose a novel single shot object detection network named Detection with Enriched Semantics (DES). Our motivation is to enrich the semantics of object detection features within a typical deep detector, by a semantic segmentation branch and a global activation module. The segmentation branch is supervised by weak segmentation ground-truth, i.e., no extra annotation is required. In conjunction with that, we employ a global activation module which learns relationship between channels and object classes in a self-supervised manner. Comprehensive experimental results on both PASCAL VOC and MS COCO detection datasets demonstrate the effectiveness of the proposed method. In particular, with a VGG16 based DES, we achieve an mAP of 81.7 on VOC2007 test and an mAP of 32.8 on COCO test-dev with an inference speed of 31.5 milliseconds per image on a Titan Xp GPU. With a lower resolution version, we achieve an mAP of 79.7 on VOC2007 with an inference speed of 13.0 milliseconds per image.

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arXiv2018

Training Multi-organ Segmentation Networks with Sample Selection by Relaxed Upper Confident Bound

Deep convolutional neural networks (CNNs), especially fully convolutional networks, have been widely applied to automatic medical image segmentation problems, e.g., multi-organ segmentation. Existing CNN-based segmentation methods mainly focus on looking for increasingly powerful network architectures, but pay less attention to data sampling strategies for training networks more effectively. In this paper, we present a simple but effective sample selection method for training multi-organ segmentation networks. Sample selection exhibits an exploitation-exploration strategy, i.e., exploiting hard samples and exploring less frequently visited samples. Based on the fact that very hard samples might have annotation errors, we propose a new sample selection policy, named Relaxed Upper Confident Bound (RUCB). Compared with other sample selection policies, e.g., Upper Confident Bound (UCB), it exploits a range of hard samples rather than being stuck with a small set of very hard ones, which mitigates the influence of annotation errors during training. We apply this new sample selection policy to training a multi-organ segmentation network on a dataset containing 120 abdominal CT scans and show that it boosts segmentation performance significantly.

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arXiv2018

Multi-Scale Spatially-Asymmetric Recalibration for Image Classification

Convolution is spatially-symmetric, i.e., the visual features are independent of its position in the image, which limits its ability to utilize contextual cues for visual recognition. This paper addresses this issue by introducing a recalibration process, which refers to the surrounding region of each neuron, computes an importance value and multiplies it to the original neural response. Our approach is named multi-scale spatially-asymmetric recalibration (MS-SAR), which extracts visual cues from surrounding regions at multiple scales, and designs a weighting scheme which is asymmetric in the spatial domain. MS-SAR is implemented in an efficient way, so that only small fractions of extra parameters and computations are required. We apply MS-SAR to several popular building blocks, including the residual block and the densely-connected block, and demonstrate its superior performance in both CIFAR and ILSVRC2012 classification tasks.

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arXiv2018

DeepVoting: A Robust and Explainable Deep Network for Semantic Part Detection under Partial Occlusion

In this paper, we study the task of detecting semantic parts of an object, e.g., a wheel of a car, under partial occlusion. We propose that all models should be trained without seeing occlusions while being able to transfer the learned knowledge to deal with occlusions. This setting alleviates the difficulty in collecting an exponentially large dataset to cover occlusion patterns and is more essential. In this scenario, the proposal-based deep networks, like RCNN-series, often produce unsatisfactory results, because both the proposal extraction and classification stages may be confused by the irrelevant occluders. To address this, [25] proposed a voting mechanism that combines multiple local visual cues to detect semantic parts. The semantic parts can still be detected even though some visual cues are missing due to occlusions. However, this method is manually-designed, thus is hard to be optimized in an end-to-end manner. In this paper, we present DeepVoting, which incorporates the robustness shown by [25] into a deep network, so that the whole pipeline can be jointly optimized. Specifically, it adds two layers after the intermediate features of a deep network, e.g., the pool-4 layer of VGGNet. The first layer extracts the evidence of local visual cues, and the second layer performs a voting mechanism by utilizing the spatial relationship between visual cues and semantic parts. We also propose an improved version DeepVoting+ by learning visual cues from context outside objects. In experiments, DeepVoting achieves significantly better performance than several baseline methods, including Faster-RCNN, for semantic part detection under occlusion. In addition, DeepVoting enjoys explainability as the detection results can be diagnosed via looking up the voting cues.

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arXiv2017

Generating Multiple Diverse Hypotheses for Human 3D Pose Consistent with 2D Joint Detections

We propose a method to generate multiple diverse and valid human pose hypotheses in 3D all consistent with the 2D detection of joints in a monocular RGB image. We use a novel generative model uniform (unbiased) in the space of anatomically plausible 3D poses. Our model is compositional (produces a pose by combining parts) and since it is restricted only by anatomical constraints it can generalize to every plausible human 3D pose. Removing the model bias intrinsically helps to generate more diverse 3D pose hypotheses. We argue that generating multiple pose hypotheses is more reasonable than generating only a single 3D pose based on the 2D joint detection given the depth ambiguity and the uncertainty due to occlusion and imperfect 2D joint detection. We hope that the idea of generating multiple consistent pose hypotheses can give rise to a new line of future work that has not received much attention in the literature. We used the Human3.6M dataset for empirical evaluation.

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arXiv2017

NormFace: L2 Hypersphere Embedding for Face Verification

Thanks to the recent developments of Convolutional Neural Networks, the performance of face verification methods has increased rapidly. In a typical face verification method, feature normalization is a critical step for boosting performance. This motivates us to introduce and study the effect of normalization during training. But we find this is non-trivial, despite normalization being differentiable. We identify and study four issues related to normalization through mathematical analysis, which yields understanding and helps with parameter settings. Based on this analysis we propose two strategies for training using normalized features. The first is a modification of softmax loss, which optimizes cosine similarity instead of inner-product. The second is a reformulation of metric learning by introducing an agent vector for each class. We show that both strategies, and small variants, consistently improve performance by between 0.2% to 0.4% on the LFW dataset based on two models. This is significant because the performance of the two models on LFW dataset is close to saturation at over 98%. Codes and models are released on https://github.com/happynear/NormFace

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arXiv2017

Deep Supervision for Pancreatic Cyst Segmentation in Abdominal CT Scans

Automatic segmentation of an organ and its cystic region is a prerequisite of computer-aided diagnosis. In this paper, we focus on pancreatic cyst segmentation in abdominal CT scan. This task is important and very useful in clinical practice yet challenging due to the low contrast in boundary, the variability in location, shape and the different stages of the pancreatic cancer. Inspired by the high relevance between the location of a pancreas and its cystic region, we introduce extra deep supervision into the segmentation network, so that cyst segmentation can be improved with the help of relatively easier pancreas segmentation. Under a reasonable transformation function, our approach can be factorized into two stages, and each stage can be efficiently optimized via gradient back-propagation throughout the deep networks. We collect a new dataset with 131 pathological samples, which, to the best of our knowledge, is the largest set for pancreatic cyst segmentation. Without human assistance, our approach reports a 63.44% average accuracy, measured by the Dice-Sørensen coefficient (DSC), which is higher than the number (60.46%) without deep supervision.

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arXiv2017

A Fixed-Point Model for Pancreas Segmentation in Abdominal CT Scans

Deep neural networks have been widely adopted for automatic organ segmentation from abdominal CT scans. However, the segmentation accuracy of some small organs (e.g., the pancreas) is sometimes below satisfaction, arguably because deep networks are easily disrupted by the complex and variable background regions which occupies a large fraction of the input volume. In this paper, we formulate this problem into a fixed-point model which uses a predicted segmentation mask to shrink the input region. This is motivated by the fact that a smaller input region often leads to more accurate segmentation. In the training process, we use the ground-truth annotation to generate accurate input regions and optimize network weights. On the testing stage, we fix the network parameters and update the segmentation results in an iterative manner. We evaluate our approach on the NIH pancreas segmentation dataset, and outperform the state-of-the-art by more than 4%, measured by the average Dice-Sørensen Coefficient (DSC). In addition, we report 62.43% DSC in the worst case, which guarantees the reliability of our approach in clinical applications.

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arXiv2017

Regularizing Face Verification Nets For Pain Intensity Regression

Limited labeled data are available for the research of estimating facial expression intensities. For instance, the ability to train deep networks for automated pain assessment is limited by small datasets with labels of patient-reported pain intensities. Fortunately, fine-tuning from a data-extensive pre-trained domain, such as face verification, can alleviate this problem. In this paper, we propose a network that fine-tunes a state-of-the-art face verification network using a regularized regression loss and additional data with expression labels. In this way, the expression intensity regression task can benefit from the rich feature representations trained on a huge amount of data for face verification. The proposed regularized deep regressor is applied to estimate the pain expression intensity and verified on the widely-used UNBC-McMaster Shoulder-Pain dataset, achieving the state-of-the-art performance. A weighted evaluation metric is also proposed to address the imbalance issue of different pain intensities.

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arXiv2017

Object Recognition with and without Objects

While recent deep neural networks have achieved a promising performance on object recognition, they rely implicitly on the visual contents of the whole image. In this paper, we train deep neural net- works on the foreground (object) and background (context) regions of images respectively. Consider- ing human recognition in the same situations, net- works trained on the pure background without ob- jects achieves highly reasonable recognition performance that beats humans by a large margin if only given context. However, humans still outperform networks with pure object available, which indicates networks and human beings have different mechanisms in understanding an image. Furthermore, we straightforwardly combine multiple trained networks to explore different visual cues learned by different networks. Experiments show that useful visual hints can be explicitly learned separately and then combined to achieve higher performance, which verifies the advantages of the proposed framework.

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arXiv2017

DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs

In this work we address the task of semantic image segmentation with Deep Learning and make three main contributions that are experimentally shown to have substantial practical merit. First, we highlight convolution with upsampled filters, or 'atrous convolution', as a powerful tool in dense prediction tasks. Atrous convolution allows us to explicitly control the resolution at which feature responses are computed within Deep Convolutional Neural Networks. It also allows us to effectively enlarge the field of view of filters to incorporate larger context without increasing the number of parameters or the amount of computation. Second, we propose atrous spatial pyramid pooling (ASPP) to robustly segment objects at multiple scales. ASPP probes an incoming convolutional feature layer with filters at multiple sampling rates and effective fields-of-views, thus capturing objects as well as image context at multiple scales. Third, we improve the localization of object boundaries by combining methods from DCNNs and probabilistic graphical models. The commonly deployed combination of max-pooling and downsampling in DCNNs achieves invariance but has a toll on localization accuracy. We overcome this by combining the responses at the final DCNN layer with a fully connected Conditional Random Field (CRF), which is shown both qualitatively and quantitatively to improve localization performance. Our proposed "DeepLab" system sets the new state-of-art at the PASCAL VOC-2012 semantic image segmentation task, reaching 79.7% mIOU in the test set, and advances the results on three other datasets: PASCAL-Context, PASCAL-Person-Part, and Cityscapes. All of our code is made publicly available online.

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arXiv2017

Exploiting Symmetry and/or Manhattan Properties for 3D Object Structure Estimation from Single and Multiple Images

Many man-made objects have intrinsic symmetries and Manhattan structure. By assuming an orthographic projection model, this paper addresses the estimation of 3D structures and camera projection using symmetry and/or Manhattan structure cues, which occur when the input is single- or multiple-image from the same category, e.g., multiple different cars. Specifically, analysis on the single image case implies that Manhattan alone is sufficient to recover the camera projection, and then the 3D structure can be reconstructed uniquely exploiting symmetry. However, Manhattan structure can be difficult to observe from a single image due to occlusion. To this end, we extend to the multiple-image case which can also exploit symmetry but does not require Manhattan axes. We propose a novel rigid structure from motion method, exploiting symmetry and using multiple images from the same category as input. Experimental results on the Pascal3D+ dataset show that our method significantly outperforms baseline methods.

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arXiv2017

Semi-Supervised Sparse Representation Based Classification for Face Recognition with Insufficient Labeled Samples

This paper addresses the problem of face recognition when there is only few, or even only a single, labeled examples of the face that we wish to recognize. Moreover, these examples are typically corrupted by nuisance variables, both linear (i.e., additive nuisance variables such as bad lighting, wearing of glasses) and non-linear (i.e., non-additive pixel-wise nuisance variables such as expression changes). The small number of labeled examples means that it is hard to remove these nuisance variables between the training and testing faces to obtain good recognition performance. To address the problem we propose a method called Semi-Supervised Sparse Representation based Classification (S$^3$RC). This is based on recent work on sparsity where faces are represented in terms of two dictionaries: a gallery dictionary consisting of one or more examples of each person, and a variation dictionary representing linear nuisance variables (e.g., different lighting conditions, different glasses). The main idea is that (i) we use the variation dictionary to characterize the linear nuisance variables via the sparsity framework, then (ii) prototype face images are estimated as a gallery dictionary via a Gaussian Mixture Model (GMM), with mixed labeled and unlabeled samples in a semi-supervised manner, to deal with the non-linear nuisance variations between labeled and unlabeled samples. We have done experiments with insufficient labeled samples, even when there is only a single labeled sample per person. Our results on the AR, Multi-PIE, CAS-PEAL, and LFW databases demonstrate that the proposed method is able to deliver significantly improved performance over existing methods.

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arXiv2017

Multi-Context Attention for Human Pose Estimation

In this paper, we propose to incorporate convolutional neural networks with a multi-context attention mechanism into an end-to-end framework for human pose estimation. We adopt stacked hourglass networks to generate attention maps from features at multiple resolutions with various semantics. The Conditional Random Field (CRF) is utilized to model the correlations among neighboring regions in the attention map. We further combine the holistic attention model, which focuses on the global consistency of the full human body, and the body part attention model, which focuses on the detailed description for different body parts. Hence our model has the ability to focus on different granularity from local salient regions to global semantic-consistent spaces. Additionally, we design novel Hourglass Residual Units (HRUs) to increase the receptive field of the network. These units are extensions of residual units with a side branch incorporating filters with larger receptive fields, hence features with various scales are learned and combined within the HRUs. The effectiveness of the proposed multi-context attention mechanism and the hourglass residual units is evaluated on two widely used human pose estimation benchmarks. Our approach outperforms all existing methods on both benchmarks over all the body parts.

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arXiv2016

Semantic Image Segmentation with Deep Convolutional Nets and Fully Connected CRFs

Deep Convolutional Neural Networks (DCNNs) have recently shown state of the art performance in high level vision tasks, such as image classification and object detection. This work brings together methods from DCNNs and probabilistic graphical models for addressing the task of pixel-level classification (also called "semantic image segmentation"). We show that responses at the final layer of DCNNs are not sufficiently localized for accurate object segmentation. This is due to the very invariance properties that make DCNNs good for high level tasks. We overcome this poor localization property of deep networks by combining the responses at the final DCNN layer with a fully connected Conditional Random Field (CRF). Qualitatively, our "DeepLab" system is able to localize segment boundaries at a level of accuracy which is beyond previous methods. Quantitatively, our method sets the new state-of-art at the PASCAL VOC-2012 semantic image segmentation task, reaching 71.6% IOU accuracy in the test set. We show how these results can be obtained efficiently: Careful network re-purposing and a novel application of the 'hole' algorithm from the wavelet community allow dense computation of neural net responses at 8 frames per second on a modern GPU.

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arXiv2016

Semantic Image Segmentation with Task-Specific Edge Detection Using CNNs and a Discriminatively Trained Domain Transform

Deep convolutional neural networks (CNNs) are the backbone of state-of-art semantic image segmentation systems. Recent work has shown that complementing CNNs with fully-connected conditional random fields (CRFs) can significantly enhance their object localization accuracy, yet dense CRF inference is computationally expensive. We propose replacing the fully-connected CRF with domain transform (DT), a modern edge-preserving filtering method in which the amount of smoothing is controlled by a reference edge map. Domain transform filtering is several times faster than dense CRF inference and we show that it yields comparable semantic segmentation results, accurately capturing object boundaries. Importantly, our formulation allows learning the reference edge map from intermediate CNN features instead of using the image gradient magnitude as in standard DT filtering. This produces task-specific edges in an end-to-end trainable system optimizing the target semantic segmentation quality.

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