arXiv subjects

Alena Shantsila

Publications and source records attributed to Alena Shantsila.

3 recordsLinked to original sources

arXiv2026

RetiBridge: Bridging Quantitative Retinal Biomarkers and Qualitative Diagnosis with a Knowledge-Guided Multimodal Large Language Model

Retinal biomarkers captured by color fundus photography and optical coherence tomography provide clinically valuable evidence for both ocular and systemic diseases. Multimodal large language models (MLLMs) have shown promise for retinal image interpretation, yet existing ophthalmic models rarely quantify these clinically relevant biomarkers or explicitly translate their measurements into qualitative, evidence-grounded diagnostic conclusions. To address this gap, we introduce RetiBridge, a knowledge-guided multimodal large language model that jointly analyzes color fundus photography (CFP), optical coherence tomography (OCT), and text, explicitly bridging quantitative retinal biomarkers to qualitative clinical sub-inferences and coherent diagnostic conclusions. RetiBridge combines knowledge-guided instruction generation, OCT-biomarker alignment, and supervised multimodal instruction tuning to learn a biomarker-grounded quantitative-to-qualitative diagnostic pathway. Using 15,611 paired CFP-OCT samples from UK Biobank with 31 OCT and 6 CFP biomarkers, we construct the Grounded Ophthalmic Understanding benchmark to evaluate diagnostic classification, report generation quality, and fine-grained clinical quality. Despite using only LoRA-based fine-tuning of a 7B-parameter Qwen2 backbone, RetiBridge outperforms all evaluated open-source 7B and 32B baselines, achieving the highest quantitative accuracy, evidence grounding, coverage completeness, and BERTScore, while surpassing OpenAI o3 on these key biomarker-grounded metrics. Our code and data are released in the RetiBridge repository.

cs.AI↗

arXiv2026

HadBalance: A Plug-and-Play Unified Global Geometric Prior Framework for Generalizable Biomedical Segmentation

Precise biomedical image segmentation is crucial for clinical diagnosis. Geometric cues (e.g., boundary, shape, and topology) can improve structural consistency, yet most are task-specific and lack a unified geometric foundation that generalizes across organs and modalities. We are motivated by the observation that several medical segmentation targets can be approximated as globally near-convex shapes. A convex region is one in which any two interior points can be connected by a line segment entirely contained within the region. In practice, medical targets may exhibit small local concavities or boundary irregularities; we refer to such globally convex-like shapes as near-convex. Motivated by this, we derive Hadwiger Shape Priors from Hadwiger's theorem as an interpretable global regularizer using three 2D measures: area A, perimeter P, and Euler characteristic chi, enabling transfer across organs and modalities. However, because medical datasets are shape-heterogeneous, enforcing near-convex priors uniformly can over-regularize non-convex anatomy with significant concavities, washing out concavities and fine details and degrading segmentation accuracy. To address this challenge, we propose Conflict-Aware Objective Balancing (CAOB), which integrates shape priors with segmentation in a gradient-aware manner. For each prior, CAOB removes only the gradient component that conflicts with segmentation while preserving the remaining aligned component, and adaptively regulates objective influences to prevent prior dominance. This enables stable use of shape priors on shape-heterogeneous data without erasing genuine concavities or fine structural details. We call this plug-and-play framework HadBalance.

cs.CV↗

arXiv2026

Leveraging Persistence Image to Enhance Robustness and Performance in Curvilinear Structure Segmentation

Segmenting curvilinear structures in medical images is essential for analyzing morphological patterns in clinical applications. Integrating topological properties, such as connectivity, improves segmentation accuracy and consistency. However, extracting and embedding such properties - especially from Persistence Diagrams (PD) - is challenging due to their non-differentiability and computational cost. Existing approaches mostly encode topology through handcrafted loss functions, which generalize poorly across tasks. In this paper, we propose PIs-Regressor, a simple yet effective module that learns persistence image (PI) - finite, differentiable representations of topological features - directly from data. Together with Topology SegNet, which fuses these features in both downsampling and upsampling stages, our framework integrates topology into the network architecture itself rather than auxiliary losses. Unlike existing methods that depend heavily on handcrafted loss functions, our approach directly incorporates topological information into the network structure, leading to more robust segmentation. Our design is flexible and can be seamlessly combined with other topology-based methods to further enhance segmentation performance. Experimental results show that integrating topological features enhances model robustness, effectively handling challenges like overexposure and blurring in medical imaging. Our approach on three curvilinear benchmarks demonstrate state-of-the-art performance in both pixel-level accuracy and topological fidelity.

cs.CV↗