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Alessandro Cellerino

Publications and source records attributed to Alessandro Cellerino.

2 recordsLinked to original sources

Age Predictors Through the Lens of Generalization, Bias Mitigation, and Interpretability: Reflections on Causal Implications

Chronological age predictors often fail to achieve out-of-distribution (OOD) gen- eralization due to exogenous attributes such as race, gender, or tissue. Learning an invariant representation with respect to those attributes is therefore essential to improve OOD generalization and prevent overly optimistic results. In predic- tive settings, these attributes motivate bias mitigation; in causal analyses, they appear as confounders; and when protected, their suppression leads to fairness. We coherently explore these concepts with theoretical rigor and discuss the scope of an interpretable neural network model based on adversarial representation learning. Using publicly available mouse transcriptomic datasets, we illustrate the behavior of this model relative to conventional machine learning models. We observe that the outcome of this model is consistent with the predictive results of a published study demonstrating the effects of Elamipretide on mouse skeletal and cardiac muscle. We conclude by discussing the limitations of deriving causal interpretation from such purely predictive models.

cs.LG

Convergent transcriptomic and neuroimaging signature of Autism Spectrum Disorder

Autism Spectrum Disorder (ASD) is a multi-factorial neurodevelopmental disorder, whose causes are still poorly understood. Effective therapies to reduce all the heterogeneous symptoms of the disorder do not exists yet, but behavioural programs started at a very young age may improve the quality of life of the patients. For this reason, many efforts have been dedicated to the research of a reliable biomarker for early diagnosis. Machine learning approaches to distinguish ASDs from healthy controls based on their brain Magnetic Resonance Images (MRIs) have been plagued by the problem of confounders, showing poor classification performance and inconsistency in the biomarker definition. Brain transcriptomics studies, instead, showed some converging results, but being based on data that can be acquired only post-mortem they are not useful for diagnosis. In this work, using an imaging transcriptomics approach, the following results have been obtained. 1) A deep learning based classifier resilient to confounders and able to exploit the temporal dimension of resting state functional MRIs has been developed, reaching an AUC of 0.89 on an independent test set. 2) Five gene network modules involved in ASD have been identified, by analyzing brain transcriptomics data of subjects with ASD and healthy controls. 3) By comparing the brain regions relevant for the classifier obtained in the first step and the brain-wide gene expression profiles of the modules of interest obtained in the second step, it has been proved that the regions that characterize ASD brain at the neuroimaging level are those in which four out of the five gene modules take a significantly high absolute value of expression. These results prove that, despite the heterogeneity of the disorder, it is possible to identify a neuroimaging-based biomarker of ASD, confirmed by transcriptomics.

q-bio.NC