arXiv subjects

Alessandro Giuliani

Publications and source records attributed to Alessandro Giuliani.

At least 55 records · Page 3Linked to original sources

arXiv2015

The ground state construction of bilayer graphene

We consider a model of half-filled bilayer graphene, in which the three dominant Slonczewski-Weiss-McClure hopping parameters are retained, in the presence of short range interactions. Under a smallness assumption on the interaction strength $U$ as well as on the inter-layer hopping $ε$, we construct the ground state in the thermodynamic limit, and prove its analyticity in $U$, uniformly in $ε$. The interacting Fermi surface is degenerate, and consists of eight Fermi points, two of which are protected by symmetries, while the locations of the other six are renormalized by the interaction, and the effective dispersion relation at the Fermi points is conical. The construction reveals the presence of different energy regimes, where the effective behavior of correlation functions changes qualitatively. The analysis of the crossover between regimes plays an important role in the proof of analyticity and in the uniform control of the radius of convergence. The proof is based on a rigorous implementation of fermionic renormalization group methods, including determinant estimates for the renormalized expansion.

math-ph↗

arXiv2015

Construction of the Lyapunov spectrum in a chaotic system displaying phase synchronization

We consider a three-dimensional chaotic system consisting of the suspension of Arnold's cat map coupled with a clock via a weak dissipative interaction. We show that the coupled system displays a synchronization phenomenon, in the sense that the relative phase between the suspension flow and the clock locks to a special value, thus making the motion fall onto a lower dimensional attractor. More specifically, we construct the attractive invariant manifold, of dimension smaller than three, using a convergent perturbative expansion. Moreover, we compute via convergent series the Lyapunov exponents, including notably the central one. The result generalizes a previous construction of the attractive invariant manifold in a similar but simpler model. The main novelty of the current construction relies in the computation of the Lyapunov spectrum, which consists of non-trivial analytic exponents. Some conjectures about a possible smoothening transition of the attractor as the coupling is increased are also discussed.

math-ph↗

arXiv2015

Columnar Phase in Quantum Dimer Models

The quantum dimer model, relevant for short-range resonant valence bond physics, is rigorously shown to have long range order in a crystalline phase in the attractive case at low temperature and not too large flipping term. This term flips horizontal dimer pairs to vertical pairs (and vice versa) and is responsible for the word `quantum' in the title. In addition to the dimers, monomers are also allowed. The mathematical method used is `reflection positivity'. The model and proof can easily be generalized to dimers or plaquettes in 3-dimensions.

cond-mat.stat-mech↗

arXiv2015

Toward a multilevel representation of protein molecules: comparative approaches to the aggregation/folding propensity problem

This paper builds upon the fundamental work of Niwa et al. [34], which provides the unique possibility to analyze the relative aggregation/folding propensity of the elements of the entire Escherichia coli (E. coli) proteome in a cell-free standardized microenvironment. The hardness of the problem comes from the superposition between the driving forces of intra- and inter-molecule interactions and it is mirrored by the evidences of shift from folding to aggregation phenotypes by single-point mutations [10]. Here we apply several state-of-the-art classification methods coming from the field of structural pattern recognition, with the aim to compare different representations of the same proteins gathered from the Niwa et al. data base; such representations include sequences and labeled (contact) graphs enriched with chemico-physical attributes. By this comparison, we are able to identify also some interesting general properties of proteins. Notably, (i) we suggest a threshold around 250 residues discriminating "easily foldable" from "hardly foldable" molecules consistent with other independent experiments, and (ii) we highlight the relevance of contact graph spectra for folding behavior discrimination and characterization of the E. coli solubility data. The soundness of the experimental results presented in this paper is proved by the statistically relevant relationships discovered among the chemico-physical description of proteins and the developed cost matrix of substitution used in the various discrimination systems.

cs.CE↗

arXiv2015

Analysis of heat kernel highlights the strongly modular and heat-preserving structure of proteins

In this paper, we study the structure and dynamical properties of protein contact networks with respect to other biological networks, together with simulated archetypal models acting as probes. We consider both classical topological descriptors, such as the modularity and statistics of the shortest paths, and different interpretations in terms of diffusion provided by the discrete heat kernel, which is elaborated from the normalized graph Laplacians. A principal component analysis shows high discrimination among the network types, either by considering the topological and heat kernel based vector characterizations. Furthermore, a canonical correlation analysis demonstrates the strong agreement among those two characterizations, providing thus an important justification in terms of interpretability for the heat kernel. Finally, and most importantly, the focused analysis of the heat kernel provides a way to yield insights on the fact that proteins have to satisfy specific structural design constraints that the other considered networks do not need to obey. Notably, the heat trace decay of an ensemble of varying-size proteins denotes subdiffusion, a peculiar property of proteins.

q-bio.BM↗

arXiv2015

A generative model for protein contact networks

In this paper we present a generative model for protein contact networks. The soundness of the proposed model is investigated by focusing primarily on mesoscopic properties elaborated from the spectra of the graph Laplacian. To complement the analysis, we study also classical topological descriptors, such as statistics of the shortest paths and the important feature of modularity. Our experiments show that the proposed model results in a considerable improvement with respect to two suitably chosen generative mechanisms, mimicking with better approximation real protein contact networks in terms of diffusion properties elaborated from the Laplacian spectra. However, as well as the other considered models, it does not reproduce with sufficient accuracy the shortest paths structure. To compensate this drawback, we designed a second step involving a targeted edge reconfiguration process. The ensemble of reconfigured networks denotes improvements that are statistically significant. As a byproduct of our study, we demonstrate that modularity, a well-known property of proteins, does not entirely explain the actual network architecture characterizing protein contact networks. In fact, we conclude that modularity, intended as a quantification of an underlying community structure, should be considered as an emergent property of the structural organization of proteins. Interestingly, such a property is suitably optimized in protein contact networks together with the feature of path efficiency.

q-bio.BM↗

arXiv2015

Height fluctuations in non-integrable classical dimers

We rigorously establish the asymptotic equivalence between the height function of interacting dimers on the square lattice and the massless Gaussian free field. Our theorem explains the microscopic origin of the sine-Gordon field theory description away from the free fermion point, which has previously been elusive. We use a novel technique, based on the combination of discrete holomorphicity with exact, constructive, renormalization group methods, which has the potential of being applicable to a variety of other non-integrable models at or close to criticality.

cond-mat.stat-mech↗

arXiv2014

Multifractal Characterization of Protein Contact Networks

The multifractal detrended fluctuation analysis of time series is able to reveal the presence of long-range correlations and, at the same time, to characterize the self-similarity of the series. The rich information derivable from the characteristic exponents and the multifractal spectrum can be further analyzed to discover important insights about the underlying dynamical process. In this paper, we employ multifractal analysis techniques in the study of protein contact networks. To this end, initially a network is mapped to three different time series, each of which is generated by a stationary unbiased random walk. To capture the peculiarities of the networks at different levels, we accordingly consider three observables at each vertex: the degree, the clustering coefficient, and the closeness centrality. To compare the results with suitable references, we consider also instances of three well-known network models and two typical time series with pure monofractal and multifractal properties. The first result of notable interest is that time series associated to proteins contact networks exhibit long-range correlations (strong persistence), which are consistent with signals in-between the typical monofractal and multifractal behavior. Successively, a suitable embedding of the multifractal spectra allows to focus on ensemble properties, which in turn gives us the possibility to make further observations regarding the considered networks. In particular, we highlight the different role that small and large fluctuations of the considered observables play in the characterization of the network topology.

q-bio.BM↗

arXiv2014

Renormalization theory of a two dimensional Bose gas: quantum critical point and quasi-condensed state

We present a renormalization group construction of a weakly interacting Bose gas at zero temperature in the two-dimensional continuum, both in the quantum critical regime and in the presence of a condensate fraction. The construction is performed within a rigorous renormalization group scheme, borrowed from the methods of constructive field theory, which allows us to derive explicit bounds on all the orders of renormalized perturbation theory. Our scheme allows us to construct the theory of the quantum critical point completely, both in the ultraviolet and in the infrared regimes, thus extending previous heuristic approaches to this phase. For the condensate phase, we solve completely the ultraviolet problem and we investigate in detail the infrared region, up to length scales of the order $(λ^3 ρ_0)^{-1/2}$ (here $λ$ is the interaction strength and $ρ_0$ the condensate density), which is the largest length scale at which the problem is perturbative in nature. We exhibit violations to the formal Ward Identities, due to the momentum cutoff used to regularize the theory, which suggest that previous proposals about the existence of a non-perturbative non-trivial fixed point for the infrared flow should be reconsidered.

cond-mat.quant-gas↗

arXiv2014

Validity of spin wave theory for the quantum Heisenberg model

Spin wave theory is a key ingredient in our comprehension of quantum spin systems, and is used successfully for understanding a wide range of magnetic phenomena, including magnon condensation and stability of patterns in dipolar systems. Nevertheless, several decades of research failed to establish the validity of spin wave theory rigorously, even for the simplest models of quantum spins. A rigorous justification of the method for the three-dimensional quantum Heisenberg ferromagnet at low temperatures is presented here. We derive sharp bounds on its free energy by combining a bosonic formulation of the model introduced by Holstein and Primakoff with probabilistic estimates and operator inequalities.

cond-mat.stat-mech↗

arXiv2013

Realization of stripes and slabs in two and three dimensions

We consider Ising models in two and three dimensions with nearest neighbor ferromagnetic interactions and long range, power law decaying, antiferromagnetic interactions. If the strength of the ferromagnetic coupling J is larger than a critical value J_c, then the ground state is homogeneous and ferromagnetic. As the critical value is approached from smaller values of J, it is believed that the ground state consists of a periodic array of stripes (d=2) or slabs (d=3), all of the same size and alternating magnetization. Here we prove rigorously that the ground state energy per site converges to that of the optimal periodic striped/slabbed state, in the limit that J tends to the ferromagnetic transition point. While this theorem does not prove rigorously that the ground state is precisely striped/slabbed, it does prove that in any suitably large box the ground state is striped/slabbed with high probability.

cond-mat.stat-mech↗

arXiv2013

Formation of stripes and slabs near the ferromagnetic transition

We consider Ising models in d=2 and d=3 dimensions with nearest neighbor ferromagnetic and long-range antiferromagnetic interactions, the latter decaying as (distance)^(-p), p>2d, at large distances. If the strength J of the ferromagnetic interaction is larger than a critical value J_c, then the ground state is homogeneous. It has been conjectured that when J is smaller than but close to J_c the ground state is periodic and striped, with stripes of constant width h=h(J), and h tends to infinity as J tends to J_c from below. (In d=3 stripes mean slabs, not columns.) Here we rigorously prove that, if we normalize the energy in such a way that the energy of the homogeneous state is zero, then the ratio e_0(J)/e_S(J) tends to 1 as J tends to J_c from below, with e_S(J) being the energy per site of the optimal periodic striped/slabbed state and e_0(J) the actual ground state energy per site of the system. Our proof comes with explicit bounds on the difference e_0(J)-e_S(J) at small but finite J_c-J, and also shows that in this parameter range the ground state is striped/slabbed in a certain sense: namely, if one looks at a randomly chosen window, of suitable size l (very large compared to the optimal stripe size h(J)), one finds a striped/slabbed state with high probability.

math-ph↗

arXiv2012

Universal finite size corrections and the central charge in non solvable Ising models

We investigate a non solvable two-dimensional ferromagnetic Ising model with nearest neighbor plus weak finite range interactions of strength λ. We rigorously establish one of the predictions of Conformal Field Theory (CFT), namely the fact that at the critical temperature the finite size corrections to the free energy are universal, in the sense that they are exactly independent of the interaction. The corresponding central charge, defined in terms of the coefficient of the first subleading term to the free energy, as proposed by Affleck and Blote-Cardy-Nightingale, is constant and equal to 1/2 for all 0<λ<λ_0 and λ_0 a small but finite convergence radius. This is one of the very few cases where the predictions of CFT can be rigorously verified starting from a microscopic non solvable statistical model. The proof uses a combination of rigorous renormalization group methods with a novel partition function inequality, valid for ferromagnetic interactions.

math-ph↗

arXiv2012

The nematic phase of a system of long hard rods - ICMP12 talk, Aalborg, August 2012

In this talk I consider a two-dimensional lattice model for liquid crystals consisting of long rods interacting via purely hard core interactions, with two allowed orientations defined by the underlying lattice. I report a rigorous proof of the existence of a nematic phase: by this I mean that at intermediate densities the system exhibits orientational order, either horizontal or vertical, but no positional order. The proof is based on a two-scales cluster expansion: first the system is coarse-grained on a scale comparable with the rods' length; then the resulting effective theory is re-expressed as a contours' model, which can be treated by Pirogov-Sinai methods. The talk is based on joint work with Margherita Disertori.

math-ph↗

arXiv2012

Froth-like minimizers of a non local free energy functional with competing interactions

We investigate the ground and low energy states of a one dimensional non local free energy functional describing at a mean field level a spin system with both ferromagnetic and antiferromagnetic interactions. In particular, the antiferromagnetic interaction is assumed to have a range much larger than the ferromagnetic one. The competition between these two effects is expected to lead to the spontaneous emergence of a regular alternation of long intervals on which the spin profile is magnetized either up or down, with an oscillation scale intermediate between the range of the ferromagnetic and that of the antiferromagnetic interaction. In this sense, the optimal or quasi-optimal profiles are "froth-like": if seen on the scale of the antiferromagnetic potential they look neutral, but if seen at the microscope they actually consist of big bubbles of two different phases alternating among each other. In this paper we prove the validity of this picture, we compute the oscillation scale of the quasi-optimal profiles and we quantify their distance in norm from a reference periodic profile. The proof consists of two main steps: we first coarse grain the system on a scale intermediate between the range of the ferromagnetic potential and the expected optimal oscillation scale; in this way we reduce the original functional to an effective "sharp interface" one. Next, we study the latter by reflection positivity methods, which require as a key ingredient the exact locality of the short range term. Our proof has the conceptual interest of combining coarse graining with reflection positivity methods, an idea that is presumably useful in much more general contexts than the one studied here.

math-ph↗

arXiv2012

The scaling limit of the energy correlations in non integrable Ising models

We obtain an explicit expression for the multipoint energy correlations of a non solvable two-dimensional Ising models with nearest neighbor ferromagnetic interactions plus a weak finite range interaction of strength $λ$, in a scaling limit in which we send the lattice spacing to zero and the temperature to the critical one. Our analysis is based on an exact mapping of the model into an interacting lattice fermionic theory, which generalizes the one originally used by Schultz, Mattis and Lieb for the nearest neighbor Ising model. The interacting model is then analyzed by a multiscale method first proposed by Pinson and Spencer. If the lattice spacing is finite, then the correlations cannot be computed in closed form: rather, they are expressed in terms of infinite, convergent, power series in $λ$. In the scaling limit, these infinite expansions radically simplify and reduce to the limiting energy correlations of the integrable Ising model, up to a finite renormalization of the parameters. Explicit bounds on the speed of convergence to the scaling limit are derived.

math-ph↗

arXiv2012

The nematic phase of a system of long hard rods

We consider a two-dimensional lattice model for liquid crystals consisting of long rods interacting via purely hard core interactions, with two allowed orientations defined by the underlying lattice. We rigorously prove the existence of a nematic phase, i.e., we show that at intermediate densities the system exhibits orientational order, either horizontal or vertical, but no positional order. The proof is based on a two-scales cluster expansion: we first coarse grain the system on a scale comparable with the rods' length; then we express the resulting effective theory as a contour's model, which can be treated by Pirogov-Sinai methods.

math-ph↗

arXiv2011

Exact RG computation of the optical conductivity of graphene

The optical conductivity of a system of electrons on the honeycomb lattice interacting through an electromagnetic field is computed by truncated exact Renormalization Group (RG) methods. We find that the conductivity has the universal value pi/2 times the conductivity quantum up to negligible corrections vanishing as a power law in the limit of low frequencies.

cond-mat.str-el↗