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Alessandro Gulotta

Publications and source records attributed to Alessandro Gulotta.

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Beyond uniform screening: electrostatic heterogeneity dictates solution structure of complex macromolecules

The complexity of biomolecular interactions necessitates advanced methodologies to accurately capture their behavior in solution. In this work, we focus on monoclonal antibodies and adopt a multi-scale coarse-graining strategy for their modeling, with particular emphasis on the role of electrostatic interactions. Using scattering experiments, theoretical analysis, and large-scale computer simulations, we explicitly compare two selected case studies-markedly different in their charge distributions. Through mutually corroborating lines of evidence, we demonstrate that conventional approaches relying on electrostatic screening and implicit charge representations fail to capture the structural and thermodynamic properties of antibody solutions when strong charge heterogeneity is present, even at a moderate (amino acid) level of coarse-graining. These findings highlight the importance of a correct treatment of electrostatic interactions and ion screening for heterogeneously- and oppositely-charged colloidal and protein systems. Such considerations are essential to move beyond descriptive models towards a truly predictive framework, with direct implications for the formulation of therapeutics and the treatment of other complex soft-matter systems.

cond-mat.soft

Combining scattering experiments and colloid theory to characterize charge effects in concentrated antibody solutions

Charges and their contribution to protein-protein interactions are essential for the key structural and dynamic properties of monoclonal antibody (mAb) solutions. In fact, they influence the apparent molecular weight, the static structure factor, the collective diffusion coefficient or the relative viscosity and their concentration dependence. Further, charges play an important role in the colloidal stability of mAbs. There exist standard experimental tools to characterise mAb net charges such as the measurement of the electrophoretic mobility, the second virial coefficient, or the diffusion interaction parameter. However, the resulting values are difficult to be directly related to the actual overall net charge of the antibody and to theoretical predictions based on its known molecular structure. Here, we report the results of a systematic investigation of the solution properties of a charged IgG1 mAb as a function of concentration and ionic strength using a combination of electrophoretic measurements, static and dynamic light scattering, small-angle x-ray scattering (SAXS), and tracer particle-based microrheology. We analyse and interpret the experimental results using established colloid theory and coarse-grained computer simulations. We discuss the potential and limits of colloidal models for the description of interaction effects of charged mAbs, in particular pointing out the importance of incorporating shape and charge anisotropy when attempting to predict structural and dynamic solution properties at high concentrations.

cond-mat.soft

Probing cage relaxation in concentrated protein solutions by XPCS

Diffusion of proteins on length scales of their own diameter in highly concentrated solutions is essential for understanding the cellular machinery of living cells, but its experimental characterization remains a challenge. While X-ray photon correlation spectroscopy (XPCS) is currently the only technique that in principle allows for a measurement of long-time collective diffusion on these length scales for such systems, its application to protein solutions is seriously hampered by radiation damage caused by the highly intense X-ray beams required for such experiments. Here we apply an experimental design and an analysis strategy that allow us to successfully use XPCS experiments in order to measure collective long-time cage relaxation in highly crowded solutions of the eye lens protein α-crystallin close to and beyond dynamical arrest. We also address the problem of radiation-induced damage in such experiments. We demonstrate that radiation effects depend both on the total dose as well as the dose rate of the absorbed radiation, and discuss possible processes and mechanism responsible for the observed radiation effects as well as their consequences for future applications of XPCS in biological systems.

cond-mat.soft