arXiv subjects

Alessandro Sarti

Publications and source records attributed to Alessandro Sarti.

At least 19 recordsLinked to original sources

arXiv2026

A sub-Riemannian model of neural states in the primary motor cortex

We develop a neurogeometric model for the arm area of motor cortex, which encodes complex motor primitives, ranging from simple movement features like movement direction, to short hand trajectories, termed fragments, and ultimately to more complex patterns known as neural states (Georgopoulos, Hatsopoulos, Kadmon-Harpaz et al). Based on the sub-riemannian framework introduced in 2023, we model the space of fragments as a set of short curves defined by kinematic parameters. We then introduce a geometric kernel that serves as a model for cortical connectivity and use it in a differential equation to describe cortical activity. By applying a grouping algorithm to this cortical activity model, we successfully recover the neural states observed in Kadmon-Harpaz et al, which were based on measured cortical activity. This confirms that the choice of kinematic variables and the distance metric used here are sufficient to explain the phenomena of neural state formation. The modularity of our model reflects the brain's hierarchical structure, where initial groupings in the kinematic space $\mathcal{M}$ lead to more abstract representations. This approach mimics how the brain processes stimuli at different scales, extracting both local and global properties.

q-bio.NC↗

arXiv2026

A sub-Riemannian model of the motor cortex with Wasserstein distance

This study aims to better understand the functional geometry of the motor cortex, starting from different sources of experimental evidence. Recent studies have proved that cells of the primary motor cortex (M1) are sensitive to short hand trajectories called fragments. Here, we propose a sub-Riemannian higher-dimensional geometry accounting for geometric and kinematic properties. Due to the constraints of the geometry, horizontal curves naturally satisfy a relation between geometric and kinematic properties experimentally observed. In the space of trajectories, we also apply a clustering algorithm based on the Wasserstein distance: we obtain a grouping which nicely fits the observed experimental data much more efficiently than the Sobolev distance.

q-bio.NC↗

arXiv2024

Individuation of 3D perceptual units from neurogeometry of binocular cells

We model the functional architecture of the early stages of three-dimensional vision by extending the neurogeometric sub-Riemannian model for stereo-vision introduced in \cite{BCSZ23}. A new framework for correspondence is introduced that integrates a neural-based algorithm to achieve stereo correspondence locally while, simultaneously, organizing the corresponding points into global perceptual units. The result is an effective scene segmentation. We achieve this using harmonic analysis on the sub-Riemannian structure and show, in a comparison against Riemannian distance, that the sub-Riemannian metric is central to the solution.

q-bio.NC↗

arXiv2023

Cortical Functional architectures as contact and sub-Riemannian geometry

In a joint paper, Jean Petitot together with the authors of the present paper described the functional geometry of the visual cortex as the symplectization of a contact form to describe the family of cells sensitive to position, orientation and scale. In the present paper, as a "homage" to the enormous contribution of Jean Petitot to neurogeometry, we will extend this approach to more complex functional architectures built as a sequence of contactization or a symplectization process, able to extend the dimension of the space. We will also outline a few examples where a sub-Riemannian lifting is needed.

q-bio.NC↗

arXiv2023

The cortical V1 transform as a heterogeneous Poisson problem

Receptive profiles of V1 cortical cells are very heterogeneous and act by differentiating the stimulus image as operators changing from point to point. A lightness and color constancy image can be reconstructed as the solution of the associated inverse problem, that is a Poisson equation with heterogeneous differential operators. At the neural level the weights of short range connectivity constitute the fundamental solution of the Poisson problem adapted point by point. A first demonstration of convergence of the result towards homogeneous reconstructions is proposed by means of homogenisation techniques.

math.AP↗

arXiv2023

A sub-Riemannian model of the functional architecture of M1 for arm movement direction

In this paper we propose a neurogeometrical model of the behaviour of cells of the arm area of the primary motor cortex (M1). We mathematically express the hypercolumnar organization of M1 discovered by Georgopoulos, as a fiber bundle, as in classical sub-riemannian models of the visual cortex (Hoffmann, Petitot, Citti-Sarti). On this structure, we consider the selective tuning of M1 neurons of kinematic variables of positions and directions of movement. We then extend this model to encode the notion of fragments of movements introduced by Hatsopoulos. In our approach fragments are modelled as integral curves of vector fields in a suitable sub-Riemannian space. These fragments are in good agreements with movement decomposition from neural activity data. Here, we recover these patterns through a spectral clustering algorithm in the subriemannian structure we introduced, and compare our results with the neurophysiological ones of Kadmon-Harpaz et al.

q-bio.NC↗

arXiv2023

Functional architecture of M1 cells encoding movement direction

In this paper we propose a neurogeometrical model of the behaviour of cells of the arm area of the primary motor cortex (M1). We will mathematically express as a fiber bundle the hypercolumnar organization of this cortical area, first modelled by Georgopoulos in \cite{georgopoulos1982relations, georgopoulos2015columnar}. On this structure, we will consider the selective tuning of M1 neurons of kinematic variables of positions and directions of movement. We will then extend this model to encode the notion of fragments introduced by Hatsopoulos \cite{Encoding} which describes the selectivity of neurons to movement direction varying in time. This leads to consider a higher dimensional geometrical structure where fragments are represented as integral curves. A comparison with the curves obtained through numerical simulations and experimental data will be presented. Moreover, neural activity shows coherent behaviours represented in terms of movement trajectories pointing to a specific pattern of movement decomposition \cite{kadmon2019movement}. Here, we will recover this pattern through a spectral clustering algorithm in the subriemannian structure we introduced, and compare our results with the neurophysiological one of \cite{kadmon2019movement}.

q-bio.NC↗

arXiv2023

A model of reaching via subriemannian geodesics in Engel-type group

In this paper, we propose a model of arm reaching movements expressed in terms of geodesics in a sub-Riemannian space. We will choose a set of kinematic variables to which motor cortical cells are selective with the purpose of modelling the specific task of reaching. Minimizing trajectories will be recovered as suitable geodesics of the geometric spaces arising from the selective behaviour of M1 neurons. We will then extend this model by including the direction of arm movement. On this set, we will define a suitable sub-Riemannian metric able to provide a geometric interpretation of two-dimensional task-dependent arm reaching movements.

math.OC↗

arXiv2023

Good continuation in 3D: the neurogeometry of stereo vision

Classical good continuation for image curves is based on $2D$ position and orientation. It is supported by the columnar organization of cortex, by psychophysical experiments, and by rich models of (differential) geometry. Here we extend good continuation to stereo. We introduce a neurogeometric model, in which the parametrizations involve both spatial and orientation disparities. Our model provides insight into the neurobiology, suggesting an implicit organization for neural interactions and a well-defined $3D$ association field. Our model sheds light on the computations underlying the correspondence problem, and illustrates how good continuation in the world generalizes good continuation in the plane.

q-bio.NC↗

arXiv2022

Cortically based optimal transport

We introduce a model for image morphing in the primary visual cortex V1 to perform completion of missing images in time. We model the output of simple cells through a family of Gabor filters and the propagation of the neural signal accordingly to the functional geometry induced by horizontal connectivity. Then we model the deformation between two images as a path relying two different outputs. This path is obtained by optimal transport considering the Wasserstein distance geodesics associated to some probability measures naturally induced by the outputs on V1. The frame of Gabor filters allows to project back the output path, therefore obtaining an associated image stimulus deformation. We perform a numerical implementation of our cortical model, assessing its ability in reconstructing rigidi motions of simple shapes.

math.AP↗

arXiv2022

A framework for stereo vision via optimal transport

We present a theoretical framework for a stereo vision method via optimal transport tools. We consider two aligned optical systems and we develop the matching between the two pictures line by line. By considering a regularized version of the optimal transport, we can speed up the computation and obtain a very accurate disparity function evaluation. Moreover, via this same method we can approach successfully the case of images with occluded regions.

math.MG↗

arXiv2021

LGN-CNN: a biologically inspired CNN architecture

In this paper we introduce a biologically inspired Convolutional Neural Network (CNN) architecture called LGN-CNN that has a first convolutional layer composed by a single filter that mimics the role of the Lateral Geniculate Nucleus (LGN). The first layer of the neural network shows a rotational symmetric pattern justified by the structure of the net itself that turns up to be an approximation of a Laplacian of Gaussian (LoG). The latter function is in turn a good approximation of the receptive field profiles (RFPs) of the cells in the LGN. The analogy with the visual system is established, emerging directly from the architecture of the neural network. A proof of rotation invariance of the first layer is given on a fixed LGN-CNN architecture and the computational results are shown. Thus, contrast invariance capability of the LGN-CNN is investigated and a comparison between the Retinex effects of the first layer of LGN-CNN and the Retinex effects of a LoG is provided on different images. A statistical study is done on the filters of the second convolutional layer with respect to biological data. In conclusion, the model we have introduced approximates well the RFPs of both LGN and V1 attaining similar behavior as regards long range connections of LGN cells that show Retinex effects.

cs.NE↗

arXiv2021

Emergence of Lie symmetries in functional architectures learned by CNNs

In this paper we study the spontaneous development of symmetries in the early layers of a Convolutional Neural Network (CNN) during learning on natural images. Our architecture is built in such a way to mimic the early stages of biological visual systems. In particular, it contains a pre-filtering step $\ell^0$ defined in analogy with the Lateral Geniculate Nucleus (LGN). Moreover, the first convolutional layer is equipped with lateral connections defined as a propagation driven by a learned connectivity kernel, in analogy with the horizontal connectivity of the primary visual cortex (V1). The layer $\ell^0$ shows a rotational symmetric pattern well approximated by a Laplacian of Gaussian (LoG), which is a well-known model of the receptive profiles of LGN cells. The convolutional filters in the first layer can be approximated by Gabor functions, in agreement with well-established models for the profiles of simple cells in V1. We study the learned lateral connectivity kernel of this layer, showing the emergence of orientation selectivity w.r.t. the learned filters. We also examine the association fields induced by the learned kernel, and show qualitative and quantitative comparisons with known group-based models of V1 horizontal connectivity. These geometric properties arise spontaneously during the training of the CNN architecture, analogously to the emergence of symmetries in visual systems thanks to brain plasticity driven by external stimuli.

q-bio.NC↗

arXiv2020

Geometrical Optical Illusion via Sub-Riemannian Geodesics in the Roto-Translation Group

We present a neuro-mathematical model for geometrical optical illusions (GOIs), a class of illusory phenomena that consists in a mismatch of geometrical properties of the visual stimulus and its associated percept. They take place in the visual areas V1/V2 whose functional architecture have been modelled in previous works by Citti and Sarti as a Lie group equipped with a sub-Riemannian (SR) metric. Here we extend their model proposing that the metric responsible for the cortical connectivity is modulated by the modelled neuro-physiological response of simple cells to the visual stimulus, hence providing a more biologically plausible model that takes into account a presence of visual stimulus. Illusory contours in our model are described as geodesics in the new metric. The model is confirmed by numerical simulations, where we compute the geodesics via SR-Fast Marching.

q-bio.NC↗

arXiv2019

KerCNNs: biologically inspired lateral connections for classification of corrupted images

The state of the art in many computer vision tasks is represented by Convolutional Neural Networks (CNNs). Although their hierarchical organization and local feature extraction are inspired by the structure of primate visual systems, the lack of lateral connections in such architectures critically distinguishes their analysis from biological object processing. The idea of enriching CNNs with recurrent lateral connections of convolutional type has been put into practice in recent years, in the form of learned recurrent kernels with no geometrical constraints. In the present work, we introduce biologically plausible lateral kernels encoding a notion of correlation between the feedforward filters of a CNN: at each layer, the associated kernel acts as a transition kernel on the space of activations. The lateral kernels are defined in terms of the filters, thus providing a parameter-free approach to assess the geometry of horizontal connections based on the feedforward structure. We then test this new architecture, which we call KerCNN, on a generalization task related to global shape analysis and pattern completion: once trained for performing basic image classification, the network is evaluated on corrupted testing images. The image perturbations examined are designed to undermine the recognition of the images via local features, thus requiring an integration of context information - which in biological vision is critically linked to lateral connectivity. Our KerCNNs turn out to be far more stable than CNNs and recurrent CNNs to such degradations, thus validating this biologically inspired approach to reinforce object recognition under challenging conditions.

cs.CV↗

arXiv2019

A metric model for the functional architecture of the visual cortex

The purpose of this work is to construct a model for the functional architecture of the primary visual cortex (V1), based on a structure of metric measure space induced by the underlying organization of receptive profiles (RPs) of visual cells. In order to account for the horizontal connectivity of V1 in such a context, a diffusion process compatible with the geometry of the space is defined following the classical approach of K.-T. Sturm. The construction of our distance function does neither require any group parameterization of the family of RPs, nor involve any differential structure. As such, it adapts to non-parameterized sets of RPs, possibly obtained through numerical procedures; it also allows to model the lateral connectivity arising from non-differential metrics such as the one induced on a pinwheel surface by a family of filters of vanishing scale. On the other hand, when applied to the classical framework of Gabor filters, this construction yields a distance approximating the sub-Riemannian structure proposed as a model for V1 by G. Citti and A. Sarti [J Math Imaging Vis 24: 307 (2006)], thus showing itself to be consistent with existing cortex models.

math.MG↗

arXiv2019

From receptive profiles to a metric model of V1

In this work we show how to construct connectivity kernels induced by the receptive profiles of simple cells of the primary visual cortex (V1). These kernels are directly defined by the shape of such profiles: this provides a metric model for the functional architecture of V1, whose global geometry is determined by the reciprocal interactions between local elements. Our construction adapts to any bank of filters chosen to represent a set of receptive profiles, since it does not require any structure on the parameterization of the family. The connectivity kernel that we define carries a geometrical structure consistent with the well-known properties of long-range horizontal connections in V1, and it is compatible with the perceptual rules synthesized by the concept of association field. These characteristics are still present when the kernel is constructed from a bank of filters arising from an unsupervised learning algorithm.

math.MG↗

arXiv2019

A neuro-mathematical model for size and context related illusions

We provide here a mathematical model of size/context illusions, inspired by the functional architecture of the visual cortex. We first recall previous models of scale and orientation, in particular the one in (Sarti et al., 2008), and simplify it, only considering the feature of scale. Then we recall the deformation model of illusion, introduced by (Franceschiello et al. 2017), to describe orientation related GOIs, and adapt it to size illusions. We finally apply the model to the Ebbinghaus and Delboeuf illusions, validating the results by comparing with experimental data from (Massaro et al., 1971) and (Roberts et al., 2005).

q-bio.NC↗