arXiv subjects

Alex Druinsky

Publications and source records attributed to Alex Druinsky.

6 recordsLinked to original sources

arXiv2016

Hypergraph Partitioning for Sparse Matrix-Matrix Multiplication

We propose a fine-grained hypergraph model for sparse matrix-matrix multiplication (SpGEMM), a key computational kernel in scientific computing and data analysis whose performance is often communication bound. This model correctly describes both the interprocessor communication volume along a critical path in a parallel computation and also the volume of data moving through the memory hierarchy in a sequential computation. We show that identifying a communication-optimal algorithm for particular input matrices is equivalent to solving a hypergraph partitioning problem. Our approach is sparsity dependent, meaning that we seek the best algorithm for the given input matrices. In addition to our (3D) fine-grained model, we also propose coarse-grained 1D and 2D models that correspond to simpler SpGEMM algorithms. We explore the relations between our models theoretically, and we study their performance experimentally in the context of three applications that use SpGEMM as a key computation. For each application, we find that at least one coarse-grained model is as communication efficient as the fine-grained model. We also observe that different applications have affinities for different algorithms. Our results demonstrate that hypergraphs are an accurate model for reasoning about the communication costs of SpGEMM as well as a practical tool for exploring the SpGEMM algorithm design space.

cs.DC↗

arXiv2015

Wilkinson's Inertia-Revealing Factorization and Its Application to Sparse Matrices

We propose a new inertia-revealing factorization for sparse symmetric matrices. The factorization scheme and the method for extracting the inertia from it were proposed in the 1960s for dense, banded, or tridiagonal matrices, but they have been abandoned in favor of faster methods. We show that this scheme can be applied to any sparse symmetric matrix and that the fill in the factorization is bounded by the fill in the sparse QR factorization of the same matrix (but is usually much smaller). We describe our serial proof-of-concept implementation, and present experimental results, studying the method's numerical stability and performance.

math.NA↗

arXiv2015

Improving the numerical stability of fast matrix multiplication

Fast algorithms for matrix multiplication, namely those that perform asymptotically fewer scalar operations than the classical algorithm, have been considered primarily of theoretical interest. Apart from Strassen's original algorithm, few fast algorithms have been efficiently implemented or used in practical applications. However, there exist many practical alternatives to Strassen's algorithm with varying performance and numerical properties. Fast algorithms are known to be numerically stable, but because their error bounds are slightly weaker than the classical algorithm, they are not used even in cases where they provide a performance benefit. We argue in this paper that the numerical sacrifice of fast algorithms, particularly for the typical use cases of practical algorithms, is not prohibitive, and we explore ways to improve the accuracy both theoretically and empirically. The numerical accuracy of fast matrix multiplication depends on properties of the algorithm and of the input matrices, and we consider both contributions independently. We generalize and tighten previous error analyses of fast algorithms and compare their properties. We discuss algorithmic techniques for improving the error guarantees from two perspectives: manipulating the algorithms, and reducing input anomalies by various forms of diagonal scaling. Finally, we benchmark performance and demonstrate our improved numerical accuracy.

math.NA↗

arXiv2013

Revisiting Asynchronous Linear Solvers: Provable Convergence Rate Through Randomization

Asynchronous methods for solving systems of linear equations have been researched since Chazan and Miranker's pioneering 1969 paper on chaotic relaxation. The underlying idea of asynchronous methods is to avoid processor idle time by allowing the processors to continue to make progress even if not all progress made by other processors has been communicated to them. Historically, the applicability of asynchronous methods for solving linear equations was limited to certain restricted classes of matrices, such as diagonally dominant matrices. Furthermore, analysis of these methods focused on proving convergence in the limit. Comparison of the asynchronous convergence rate with its synchronous counterpart and its scaling with the number of processors were seldom studied, and are still not well understood. In this paper, we propose a randomized shared-memory asynchronous method for general symmetric positive definite matrices. We rigorously analyze the convergence rate and prove that it is linear, and is close to that of the method's synchronous counterpart if the processor count is not excessive relative to the size and sparsity of the matrix. We also present an algorithm for unsymmetric systems and overdetermined least-squares. Our work presents a significant improvement in the applicability of asynchronous linear solvers as well as in their convergence analysis, and suggests randomization as a key paradigm to serve as a foundation for asynchronous methods.

cs.DC↗

arXiv2013

Spectral Condition-Number Estimation of Large Sparse Matrices

We describe a randomized Krylov-subspace method for estimating the spectral condition number of a real matrix A or indicating that it is numerically rank deficient. The main difficulty in estimating the condition number is the estimation of the smallest singular value \sigma_{\min} of A. Our method estimates this value by solving a consistent linear least-squares problem with a known solution using a specific Krylov-subspace method called LSQR. In this method, the forward error tends to concentrate in the direction of a right singular vector corresponding to \sigma_{\min}. Extensive experiments show that the method is able to estimate well the condition number of a wide array of matrices. It can sometimes estimate the condition number when running a dense SVD would be impractical due to the computational cost or the memory requirements. The method uses very little memory (it inherits this property from LSQR) and it works equally well on square and rectangular matrices.

math.NA↗

arXiv2012

How Accurate is inv(A)*b?

Several widely-used textbooks lead the reader to believe that solving a linear system of equations Ax = b by multiplying the vector b by a computed inverse inv(A) is inaccurate. Virtually all other textbooks on numerical analysis and numerical linear algebra advise against using computed inverses without stating whether this is accurate or not. In fact, under reasonable assumptions on how the inverse is computed, x = inv(A)*b is as accurate as the solution computed by the best backward-stable solvers. This fact is not new, but obviously obscure. We review the literature on the accuracy of this computation and present a self-contained numerical analysis of it.

math.NA↗