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Alex Hagen

Publications and source records attributed to Alex Hagen.

At least 19 recordsLinked to original sources

Unsupervised domain adaptation for radioisotope identification in gamma spectroscopy

Training machine learning models for radioisotope identification using gamma spectroscopy remains an elusive challenge for many practical applications, largely stemming from the difficulty of acquiring and labeling large, diverse experimental datasets. Simulations can mitigate this challenge, but the accuracy of models trained on simulated data can deteriorate substantially when deployed to an out-of-distribution operational environment. In this study, we demonstrate that unsupervised domain adaptation (UDA) can improve the ability of a model trained on synthetic data to generalize to a new testing domain, provided unlabeled data from the target domain is available. Conventional supervised techniques are unable to utilize this data because the absence of isotope labels precludes defining a supervised classification loss. We compare a range of different UDA techniques, finding that feature alignment strategies, particularly via maximum mean discrepancy (MMD) minimization or domain-adversarial training, yield the most consistent improvement to testing scores. For instance, using a custom transformer-based neural network, we achieve a testing accuracy of $0.904 \pm 0.022$ on an experimental LaBr$_3$ test set after performing unsupervised feature alignment via MMD minimization, compared to $0.754 \pm 0.014$ before alignment. Overall, our results highlight the potential of using UDA to adapt a radioisotope classifier trained on synthetic data for real-world deployment.

cs.LG

Improvement of Nuclide Detection through Graph Spectroscopic Analysis Framework and its Application to Nuclear Facility Upset Detection

We present a method to improve the detection limit for radionuclides using spectroscopic radiation detectors and the arrival time of each detected radiation quantum. We enable this method using a neural network with an attention mechanism. We illustrate the method on the detection of Cesium release from a nuclear facility during an upset, and our method shows $2\times$ improvement over the traditional spectroscopic method. We hypothesize that our method achieves this performance increase by modulating its detection probability by the overall rate of probable detections, specifically by adapting detection thresholds based on temporal event distributions and local spectral features, and show evidence to this effect. We believe this method is applicable broadly and may be more successful for radionuclides with more complicated decay chains than Cesium; we also note that our method can generalize beyond the addition of arrival time and could integrate other data about each detection event, such as pulse quality, location in detector, or even combining the energy and time from detections in different detectors.

physics.ins-det

Bayesian SegNet for Semantic Segmentation with Improved Interpretation of Microstructural Evolution During Irradiation of Materials

Understanding the relationship between the evolution of microstructures of irradiated LiAlO2 pellets and tritium diffusion, retention and release could improve predictions of tritium-producing burnable absorber rod performance. Given expert-labeled segmented images of irradiated and unirradiated pellets, we trained Deep Convolutional Neural Networks to segment images into defect, grain, and boundary classes. Qualitative microstructural information was calculated from these segmented images to facilitate the comparison of unirradiated and irradiated pellets. We tested modifications to improve the sensitivity of the model, including incorporating meta-data into the model and utilizing uncertainty quantification. The predicted segmentation was similar to the expert-labeled segmentation for most methods of microstructural qualification, including pixel proportion, defect area, and defect density. Overall, the high performance metrics for the best models for both irradiated and unirradiated images shows that utilizing neural network models is a viable alternative to expert-labeled images.

cs.CV

Sim-to-real supervised domain adaptation for radioisotope identification

Machine learning has the potential to improve the speed and reliability of radioisotope identification using gamma spectroscopy. However, meticulously labeling an experimental dataset for training is often prohibitively expensive, while training models purely on synthetic data is risky due to the domain gap between simulated and experimental measurements. In this research, we demonstrate that supervised domain adaptation can substantially improve the performance of radioisotope identification models by transferring knowledge between synthetic and experimental data domains. We consider two domain adaptation scenarios: (1) a simulation-to-simulation adaptation, where we perform multi-label proportion estimation using simulated high-purity germanium detectors, and (2) a simulation-to-experimental adaptation, where we perform multi-class, single-label classification using measured spectra from handheld lanthanum bromide (LaBr) and sodium iodide (NaI) detectors. We begin by pretraining a spectral classifier on synthetic data using a custom transformer-based neural network. After subsequent fine-tuning on just 64 labeled experimental spectra, we achieve a test accuracy of 96% in the sim-to-real scenario with a LaBr detector, far surpassing a synthetic-only baseline model (75%) and a model trained from scratch (80%) on the same 64 spectra. Furthermore, we demonstrate that domain-adapted models learn more human-interpretable features than experiment-only baseline models. Overall, our results highlight the potential for supervised domain adaptation techniques to bridge the sim-to-real gap in radioisotope identification, enabling the development of accurate and explainable classifiers even in real-world scenarios where access to experimental data is limited.

cs.LG

SDSS-IV from 2014 to 2016: A Detailed Demographic Comparison over Three Years

The Sloan Digital Sky Survey (SDSS) is one of the largest international astronomy organizations. We present demographic data based on surveys of its members from 2014, 2015 and 2016, during the fourth phase of SDSS (SDSS-IV). We find about half of SDSS-IV collaboration members were based in North America, a quarter in Europe, and the remainder in Asia and Central and South America. Overall, 26-36% are women (from 2014 to 2016), up to 2% report non-binary genders. 11-14% report that they are racial or ethnic minorities where they live. The fraction of women drops with seniority, and is also lower among collaboration leadership. Men in SDSS-IV were more likely to report being in a leadership role, and for the role to be funded and formally recognized. SDSS-IV collaboration members are twice as likely to have a parent with a college degree, than the general population, and are ten times more likely to have a parent with a PhD. This trend is slightly enhanced for female collaboration members. Despite this, the fraction of first generation college students (FGCS) is significant (31%). This fraction increased among collaboration members who are racial or ethnic minorities (40-50%), and decreased among women (15-25%). SDSS-IV implemented many inclusive policies and established a dedicated committee, the Committee on INclusiveness in SDSS (COINS). More than 60% of the collaboration agree that the collaboration is inclusive; however, collaboration leadership more strongly agree with this than the general membership. In this paper, we explain these results in full, including the history of inclusive efforts in SDSS-IV. We conclude with a list of suggested recommendations based on our findings, which can be used to improve equity and inclusion in large astronomical collaborations, which we argue is not only moral, but will also optimize their scientific output.

astro-ph.IM

Synthesis parameter effect detection using quantitative representations and high dimensional distribution distances

Detection of effects of the parameters of the synthetic process on the microstructure of materials is an important, yet elusive goal of materials science. We develop a method for detecting effects based on copula theory, high dimensional distribution distances, and permutational statistics to analyze a designed experiment synthesizing plutonium oxide from Pu(III) Oxalate. We detect effects of strike order and oxalic acid feed on the microstructure of the resulting plutonium oxide, which match the literature well. We also detect excess bivariate effects between the pairs of acid concentration, strike order and precipitation temperature.

cond-mat.mtrl-sci

Reduction of detection limit and quantification uncertainty due to interferent by neural classification with abstention

Many measurements in the physical sciences can be cast as counting experiments, where the number of occurrences of a physical phenomenon informs the prevalence of the phenomenon's source. Often, detection of the physical phenomenon (termed signal) is difficult to distinguish from naturally occurring phenomena (termed background). In this case, the discrimination of signal events from background can be performed using classifiers, and they may range from simple, threshold-based classifiers to sophisticated neural networks. These classifiers are often trained and validated to obtain optimal accuracy, however we show that the optimal accuracy classifier does not generally coincide with a classifier that provides the lowest detection limit, nor the lowest quantification uncertainty. We present a derivation of the detection limit and quantification uncertainty in the classifier-based counting experiment case. We also present a novel abstention mechanism to minimize the detection limit or quantification uncertainty \emph{a posteriori}. We illustrate the method on two data sets from the physical sciences, discriminating Ar-37 and Ar-39 radioactive decay from non-radioactive events in a gas proportional counter, and discriminating neutrons from photons in an inorganic scintillator and report results therefrom.

physics.data-an

DBCal: Density Based Calibration of classifier predictions for uncertainty quantification

Measurement of uncertainty of predictions from machine learning methods is important across scientific domains and applications. We present, to our knowledge, the first such technique that quantifies the uncertainty of predictions from a classifier and accounts for both the classifier's belief and performance. We prove that our method provides an accurate estimate of the probability that the outputs of two neural networks are correct by showing an expected calibration error of less than 0.2% on a binary classifier, and less than 3% on a semantic segmentation network with extreme class imbalance. We empirically show that the uncertainty returned by our method is an accurate measurement of the probability that the classifier's prediction is correct and, therefore has broad utility in uncertainty propagation.

stat.ML

Accelerated Computation of a High Dimensional Kolmogorov-Smirnov Distance

Statistical testing is widespread and critical for a variety of scientific disciplines. The advent of machine learning and the increase of computing power has increased the interest in the analysis and statistical testing of multidimensional data. We extend the powerful Kolmogorov-Smirnov two sample test to a high dimensional form in a similar manner to Fasano (Fasano, 1987). We call our result the d-dimensional Kolmogorov-Smirnov test (ddKS) and provide three novel contributions therewith: we develop an analytical equation for the significance of a given ddKS score, we provide an algorithm for computation of ddKS on modern computing hardware that is of constant time complexity for small sample sizes and dimensions, and we provide two approximate calculations of ddKS: one that reduces the time complexity to linear at larger sample sizes, and another that reduces the time complexity to linear with increasing dimension. We perform power analysis of ddKS and its approximations on a corpus of datasets and compare to other common high dimensional two sample tests and distances: Hotelling's T^2 test and Kullback-Leibler divergence. Our ddKS test performs well for all datasets, dimensions, and sizes tested, whereas the other tests and distances fail to reject the null hypothesis on at least one dataset. We therefore conclude that ddKS is a powerful multidimensional two sample test for general use, and can be calculated in a fast and efficient manner using our parallel or approximate methods. Open source implementations of all methods described in this work are located at https://github.com/pnnl/ddks.

stat.CO

Scaling the training of particle classification on simulated MicroBooNE events to multiple GPUs

Measurements in Liquid Argon Time Projection Chamber (LArTPC) neutrino detectors, such as the MicroBooNE detector at Fermilab, feature large, high fidelity event images. Deep learning techniques have been extremely successful in classification tasks of photographs, but their application to LArTPC event images is challenging, due to the large size of the events. Events in these detectors are typically two orders of magnitude larger than images found in classical challenges, like recognition of handwritten digits contained in the MNIST database or object recognition in the ImageNet database. Ideally, training would occur on many instances of the entire event data, instead of many instances of cropped regions of interest from the event data. However, such efforts lead to extremely long training cycles, which slow down the exploration of new network architectures and hyperparameter scans to improve the classification performance. We present studies of scaling a LArTPC classification problem on multiple architectures, spanning multiple nodes. The studies are carried out on simulated events in the MicroBooNE detector. We emphasize that it is beyond the scope of this study to optimize networks or extract the physics from any results here. Institutional computing at Pacific Northwest National Laboratory and the SummitDev machine at Oak Ridge National Laboratory's Leadership Computing Facility have been used. To our knowledge, this is the first use of state-of-the-art Convolutional Neural Networks for particle physics and their attendant compute techniques onto the DOE Leadership Class Facilities. We expect benefits to accrue particularly to the Deep Underground Neutrino Experiment (DUNE) LArTPC program, the flagship US High Energy Physics (HEP) program for the coming decades.

physics.comp-ph

Galaxies of the $z \sim 2$ Universe. I. Grism-Selected Rest-Frame Optical Emission Line Galaxies

Euclid, WFIRST, and HETDEX will make emission-line selected galaxies the largest observed constituent in the $z > 1$ universe. However, we only have a limited understanding of the physical properties of galaxies selected via their Ly$α$ or rest-frame optical emission lines. To begin addressing this problem, we present the basic properties of $\sim 2,000$ AEGIS, COSMOS, GOODS-N, GOODS-S, and UDS galaxies identified in the redshift range $1.90 < z < 2.35$ via their [O II], H$β$, and [O III] emission lines. For these $z \sim 2$ galaxies, [O III] is generally much brighter than [O II] and H$β$, with typical rest-frame equivalent widths of several hundred Angstroms. Moreover, these strong emission-line systems span an extremely wide range of stellar mass ($\sim 3$ dex), star-formation rate ($\sim 2$ dex), and [O III] luminosity ($\sim 2$ dex). Comparing the distributions of these properties to those of continuum selected galaxies, we find that emission-line galaxies have systematically lower stellar masses and lower optical/UV dust attenuations. These measurements lay the groundwork for an extensive comparison between these rest-frame optical emission-line galaxies and Ly$α$ emitters identified in the HETDEX survey.

astro-ph.GA

The Lyman Alpha Reference Sample. VIII. Characterizing Lyman-Alpha Scattering in Nearby Galaxies

We examine the dust geometry and Lyα scattering in the galaxies of the Lyman Alpha Reference Sample (LARS), a set of 14 nearby (0.02 < $z$ < 0.2) Lyα emitting and starbursting systems with Hubble Space Telescope Lyα, Hα, and Hβ imaging. We find that the global dust properties determined by line ratios are consistent with other studies, with some of the LARS galaxies exhibiting clumpy dust media while others of them show significantly lower Lyα emission compared to their Balmer decrement. With the LARS imaging, we present Lyα/Hα and Hα/Hβ maps with spatial resolutions as low as $\sim$ 40 pc, and use these data to show that in most galaxies, the dust geometry is best modeled by three distinct regions: a central core where dust acts as a screen, an annulus where dust is distributed in clumps, and an outer envelope where Lyα photons only scatter. We show that the dust that affects the escape of Lyα is more restricted to the galaxies' central regions, while the larger Lyα halos are generated by scattering at large radii. We present an empirical modeling technique to quantify how much Lyα scatters in the halo, and find that this "characteristic" scattering distance correlates with the measured size of the Lyα halo. We note that there exists a slight anti-correlation between the scattering distance of Lyα and global dust properties.

astro-ph.GA

SDSS IV MaNGA: Discovery of an $H_α$ blob associated with a dry galaxy pair -- ejected gas or a `dark' galaxy candidate?

We report the discovery of a mysterious giant $H_α$ blob that is $\sim 8$ kpc away from the main MaNGA target 1-24145, one component of a dry galaxy merger, identified in the first-year SDSS-IV MaNGA data. The size of the $H_α$ blob is $\sim$ 3-4 kpc in radius, and the $H_α$ distribution is centrally concentrated. However, there is no optical continuum counterpart in deep broadband images reaching $\sim$26.9 mag arcsec$^{-2}$ in surface brightness. We estimate that the masses of ionized and cold gases are $3.3 \times 10^{5}$ $\rm M_{\odot}$ and $< 1.3 \times 10^{9}$ $\rm M_{\odot}$, respectively. The emission-line ratios indicate that the $H_α$ blob is photoionized by a combination of massive young stars and AGN. Furthermore, the ionization line ratio decreases from MaNGA 1-24145 to the $H_α$ blob, suggesting that the primary ionizing source may come from MaNGA 1-24145, likely a low-activity AGN. Possible explanations of this $H_α$ blob include AGN outflow, the gas remnant being tidally or ram-pressure stripped from MaNGA 1-24145, or an extremely low surface brightness (LSB) galaxy. However, the stripping scenario is less favoured according to galaxy merger simulations and the morphology of the $H_α$ blob. With the current data, we can not distinguish whether this $H_α$ blob is ejected gas due to a past AGN outburst, or a special category of `ultra-diffuse galaxy' (UDG) interacting with MaNGA 1-24145 that further induces the gas inflow to fuel the AGN in MaNGA 1-24145.

astro-ph.GA

Swift Ultraviolet Survey of the Magellanic Clouds (SUMaC). I. Shape of the Ultraviolet Dust Extinction Law and Recent Star Formation History of the Small Magellanic Cloud

We present the first results from the Swift Ultraviolet Survey of the Magellanic Clouds (SUMaC), the highest resolution ultraviolet (UV) survey of the Magellanic Clouds yet completed. In this paper, we focus on the Small Magellanic Cloud (SMC). When combined with multi-wavelength optical and infrared observations, the three near-UV filters on the Swift Ultraviolet/Optical Telescope are conducive to measuring the shape of the dust extinction curve and the strength of the 2175Å dust bump. We divide the SMC into UV-detected star-forming regions and large 200" (58~pc) pixels and then model the spectral energy distributions using a Markov Chain Monte Carlo method to constrain the ages, masses, and dust curve properties. We find that the majority of the SMC has a 2175Å dust bump, which is larger to the northeast and smaller to the southwest, and that the extinction curve is universally steeper than the Galactic curve. We also derive a star formation history and find evidence for peaks in the star formation rate at 6-10 Myr, 30-80 Myr, and 400 Myr, the latter two of which are consistent with previous work.

astro-ph.GA

The Astropy Problem

The Astropy Project (http://astropy.org) is, in its own words, "a community effort to develop a single core package for Astronomy in Python and foster interoperability between Python astronomy packages." For five years this project has been managed, written, and operated as a grassroots, self-organized, almost entirely volunteer effort while the software is used by the majority of the astronomical community. Despite this, the project has always been and remains to this day effectively unfunded. Further, contributors receive little or no formal recognition for creating and supporting what is now critical software. This paper explores the problem in detail, outlines possible solutions to correct this, and presents a few suggestions on how to address the sustainability of general purpose astronomical software.

astro-ph.IM

The Rest-Frame Optical Morphology of Emission Line Galaxies at 2 < z < 3: Evidence for Inside-Out Formation in Low-Mass Galaxies

We compare the rest-frame ultraviolet and rest-frame optical morphologies of 2 < z < 3 star-forming galaxies in the GOODS-S field using Hubble Space Telescope WFC3 and ACS images from the CANDELS, GOODS, and ERS programs. We show that the distribution of sizes and concentrations for 1.90 < z < 2.35 galaxies selected via their rest-frame optical emission-lines are statistically indistinguishable from those of Lyman-alpha emitting systems found at z ~ 2.1 and z ~ 3.1. We also show that the z > 2 star-forming systems of all sizes and masses become smaller and more compact as one shifts the observing window from the UV to the optical. We argue that this offset is due to inside-out galaxy formation over the first ~ 2 Gyr of cosmic time.

astro-ph.GA

On the Classification of UGC1382 as a Giant Low Surface Brightness Galaxy

We provide evidence that UGC1382, long believed to be a passive elliptical galaxy, is actually a giant low surface brightness (GLSB) galaxy which rivals the archetypical GLSB Malin 1 in size. Like other GLSB galaxies, it has two components: a high surface brightness disk galaxy surrounded by an extended low surface brightness (LSB) disk. For UGC1382, the central component is a lenticular system with an effective radius of 6 kpc. Beyond this, the LSB disk has an effective radius of ~38 kpc and an extrapolated central surface brightness of ~26 mag/arcsec^2. Both components have a combined stellar mass of ~8x10^10 M_sun, and are embedded in a massive (10^10 M_sun) low-density (<3 M_sun/pc^2) HI disk with a radius of 110 kpc, making this one of the largest isolated disk galaxies known. The system resides in a massive dark matter halo of at least 2x10^12 M_sun. Although possibly part of a small group, its low density environment likely plays a role in the formation and retention of the giant LSB and HI disks. We model the spectral energy distributions and find that the LSB disk is likely older than the lenticular component. UGC1382 has UV-optical colors typical of galaxies transitioning through the green valley. Within the LSB disk are spiral arms forming stars at extremely low efficiencies. The gas depletion time scale of ~10^11 yr suggests that UGC1382 may be a very long term resident of the green valley. We find that the formation and evolution of the LSB disk is best explained by the accretion of gas-rich LSB dwarf galaxies.

astro-ph.GA

Bayesian Redshift Classification of Emission-line Galaxies with Photometric Equivalent Widths

We present a Bayesian approach to the redshift classification of emission-line galaxies when only a single emission line is detected spectroscopically. We consider the case of surveys for high-redshift Lyman-alpha-emitting galaxies (LAEs), which have traditionally been classified via an inferred rest-frame equivalent width (EW) greater than 20 angstrom. Our Bayesian method relies on known prior probabilities in measured emission-line luminosity functions and equivalent width distributions for the galaxy populations, and returns the probability that an object in question is an LAE given the characteristics observed. This approach will be directly relevant for the Hobby-Eberly Telescope Dark Energy Experiment (HETDEX), which seeks to classify ~10^6 emission-line galaxies into LAEs and low-redshift [O II] emitters. For a simulated HETDEX catalog with realistic measurement noise, our Bayesian method recovers 86% of LAEs missed by the traditional EW > 20 angstrom cutoff over 2 < z < 3, outperforming the EW cut in both contamination and incompleteness. This is due to the method's ability to trade off between the two types of binary classification error by adjusting the stringency of the probability requirement for classifying an observed object as an LAE. In our simulations of HETDEX, this method reduces the uncertainty in cosmological distance measurements by 14% with respect to the EW cut, equivalent to recovering 29% more cosmological information. Rather than using binary object labels, this method enables the use of classification probabilities in large-scale structure analyses. It can be applied to narrowband emission-line surveys as well as upcoming large spectroscopic surveys including Euclid and WFIRST.

astro-ph.IM