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Alex Laini

Publications and source records attributed to Alex Laini.

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Informed Asymmetric Dirichlet Priors for Multivariate Bernoulli Mixture Models

Clustering multivariate binary data is of interest in many scientific fields, including ecology, biomedicine, and social policy. Beyond heuristic clustering algorithms, such data can be modelled using multivariate Bernoulli mixture models. Many Bayesian implementations of these models involve a trade-off between computational efficiency and full posterior inference. We propose instead a Bayesian approach able to provide both aspects. The method fixes the total number of components to a large value and employs an asymmetric Dirichlet prior on the mixture weights. The asymmetric Dirichlet hyperparameters are elicited using the popular Penalized Complexity prior framework, which provides an intuitive way for users to inform the induced distribution of the number of clusters. An efficient MCMC algorithm is then developed to fit the model. Simulations and real-world applications demonstrate that the method is competitive with existing alternatives and can outperform them in certain settings. The proposal is illustrated using an ecological dataset about presence-absence of species across multiple sites, where cluster-specific parameters are modelled on the basis of environmental conditions. Overall, the proposed method provides a computationally efficient, fully Bayesian, and interpretable framework for clustering multivariate binary data, with potential applications across diverse scientific domains.

stat.ME

Bayesian Species Distribution Models using Hierarchical Decomposition Priors

Understanding the relative contributions of environmental, spatial, and temporal processes in shaping species distribution is a central objective in ecology. Bayesian species distribution models (SDMs) offer a flexible framework for this task, yet prior specification for variance components remains challenging. To address this issue, we adapt the Hierarchical Decomposition (HD) prior framework to latent Gaussian SDMs, enabling direct and transparent prior control over variance partitioning. The HD approach reparametrizes variances into a total variance and a set of interpretable proportions, structured through a decomposition tree that reflects both model architecture and ecologically meaningful groupings of effects. We discuss a principled approach for a default tree design tailored to SDMs and a practical workflow for the step-by-step implementation of the method. The framework is illustrated using presence--absence data for 39 demersal fish species from the NOAA Northeast Fisheries Science Center fall bottom trawl survey. Results demonstrate predictive performance comparable to established priors, while providing substantially improved interpretability and transparency in variance attribution and prior sensitivity analysis.

stat.AP

PC priors for residual correlation parameters in one-factor mixed models

Lack of independence in the residuals from linear regression motivates the use of random effect models in many applied fields. We start from the one-way anova model and extend it to a general class of one-factor Bayesian mixed models, discussing several correlation structures for the within group residuals. All the considered group models are parametrized in terms of a single correlation (hyper-)parameter, controlling the shrinkage towards the case of independent residuals (iid). We derive a penalized complexity (PC) prior for the correlation parameter of a generic group model. This prior has desirable properties from a practical point of view: i) it ensures appropriate shrinkage to the iid case; ii) it depends on a scaling parameter whose choice only requires a prior guess on the proportion of total variance explained by the grouping factor; iii) it is defined on a distance scale common to all group models, thus the scaling parameter can be chosen in the same manner regardless the adopted group model. We show the benefit of using these PC priors in a case study in community ecology where different group models are compared.

stat.ME