arXiv subjects

Alexander Ecker

Publications and source records attributed to Alexander Ecker.

6 recordsLinked to original sources

arXiv2026

TrAction: Action Recognition with Sparse Trajectories

Modern action recognition models operate on memory- and compute-intensive dense RGB video volumes and frequently exploit appearance and background shortcuts, for example, predicting actions from objects or scenes instead of characteristic motion. We investigate an efficient alternative input modality that is largely free of such biases by construction: sparse point trajectories. To this end, we develop a simple transformer architecture for 2.5D trajectory-based recognition together with a masked-trajectory pretraining, which we show to substantially improve downstream action recognition accuracy. Despite using only a fraction of the dense RGB input, our method reaches 45% top-1 on Something-Something V2 and 54% on EPIC-Kitchens-100, and surpasses V-JEPA on time-reversal sensitivity. More importantly, we find trajectory features to be complementary to state-of-the-art appearance-based features. Fusing our pretrained model with DINOv2 and V-JEPA 2 improves top-1 accuracy on Something-Something V2 by 8.7 and 1.6 points, respectively. Code: https://github.com/ecker-lab/TrAction

cs.CV↗

arXiv2025

FLASH{\mu}: Fast Localizing And Sizing of Holographic Microparticles

Reconstructing the 3D location and size of microparticles from diffraction images - holograms - is a computationally expensive inverse problem that has traditionally been solved using physics-based reconstruction methods. More recently, researchers have used machine learning methods to speed up the process. However, for small particles in large sample volumes the performance of these methods falls short of standard physics-based reconstruction methods. Here we designed a two-stage neural network architecture, FLASH$\mu$, to detect small particles (6-100$\mu$m) from holograms with large sample depths up to 20cm. Trained only on synthetic data with added physical noise, our method reliably detects particles of at least 9$\mu$m diameter in real holograms, comparable to the standard reconstruction-based approaches while operating on smaller crops, at quarter of the original resolution and providing roughly a 600-fold speedup. In addition to introducing a novel approach to a non-local object detection or signal demixing problem, our work could enable low-cost, real-time holographic imaging setups.

cs.CV↗

arXiv2024

Reproducibility of predictive networks for mouse visual cortex

Deep predictive models of neuronal activity have recently enabled several new discoveries about the selectivity and invariance of neurons in the visual cortex. These models learn a shared set of nonlinear basis functions, which are linearly combined via a learned weight vector to represent a neuron's function. Such weight vectors, which can be thought as embeddings of neuronal function, have been proposed to define functional cell types via unsupervised clustering. However, as deep models are usually highly overparameterized, the learning problem is unlikely to have a unique solution, which raises the question if such embeddings can be used in a meaningful way for downstream analysis. In this paper, we investigate how stable neuronal embeddings are with respect to changes in model architecture and initialization. We find that $L_1$ regularization to be an important ingredient for structured embeddings and develop an adaptive regularization that adjusts the strength of regularization per neuron. This regularization improves both predictive performance and how consistently neuronal embeddings cluster across model fits compared to uniform regularization. To overcome overparametrization, we propose an iterative feature pruning strategy which reduces the dimensionality of performance-optimized models by half without loss of performance and improves the consistency of neuronal embeddings with respect to clustering neurons. This result suggests that to achieve an objective taxonomy of cell types or a compact representation of the functional landscape, we need novel architectures or learning techniques that improve identifiability. We will make our code available at publication time.

q-bio.NC↗

arXiv2023

TreeLearn: A deep learning method for segmenting individual trees from ground-based LiDAR forest point clouds

Laser-scanned point clouds of forests make it possible to extract valuable information for forest management. To consider single trees, a forest point cloud needs to be segmented into individual tree point clouds. Existing segmentation methods are usually based on hand-crafted algorithms, such as identifying trunks and growing trees from them, and face difficulties in dense forests with overlapping tree crowns. In this study, we propose TreeLearn, a deep learning-based approach for tree instance segmentation of forest point clouds. TreeLearn is trained on already segmented point clouds in a data-driven manner, making it less reliant on predefined features and algorithms. Furthermore, TreeLearn is implemented as a fully automatic pipeline and does not rely on extensive hyperparameter tuning, which makes it easy to use. Additionally, we introduce a new manually segmented benchmark forest dataset containing 156 full trees. The data is generated by mobile laser scanning and contributes to create a larger and more diverse data basis for model development and fine-grained instance segmentation evaluation. We trained TreeLearn on forest point clouds of 6665 trees, labeled using the Lidar360 software. An evaluation on the benchmark dataset shows that TreeLearn performs as well as the algorithm used to generate its training data. Furthermore, the performance can be vastly improved by fine-tuning the model using manually annotated datasets. We evaluate TreeLearn on our benchmark dataset and the Wytham Woods dataset, outperforming the recent SegmentAnyTree, ForAINet and TLS2Trees methods. The TreeLearn code and all datasets that were created in the course of this work are made publicly available.

cs.CV↗

arXiv2023

Probabilistic Neural Transfer Function Estimation with Bayesian System Identification

Neural population responses in sensory systems are driven by external physical stimuli. This stimulus-response relationship is typically characterized by receptive fields, which have been estimated by neural system identification approaches. Such models usually requires a large amount of training data, yet, the recording time for animal experiments is limited, giving rise to epistemic uncertainty for the learned neural transfer functions. While deep neural network models have demonstrated excellent power on neural prediction, they usually do not provide the uncertainty of the resulting neural representations and derived statistics, such as the stimuli driving neurons optimally, from in silico experiments. Here, we present a Bayesian system identification approach to predict neural responses to visual stimuli, and explore whether explicitly modeling network weight variability can be beneficial for identifying neural response properties. To this end, we use variational inference to estimate the posterior distribution of each model weight given the training data. Tests with different neural datasets demonstrate that this method can achieve higher or comparable performance on neural prediction, with a much higher data efficiency compared to Monte Carlo dropout methods and traditional models using point estimates of the model parameters. Furthermore, our approach enables to identify response properties with credible intervals and perform statistical test for the learned neural features, which avoid the idiosyncrasy of a single model. Finally, in silico experiments show that our model generates stimuli driving neuronal activity significantly better than traditional models, particularly in the limited-data regime.

q-bio.NC↗

arXiv2020

Assessing out-of-domain generalization for robust building damage detection

An important step for limiting the negative impact of natural disasters is rapid damage assessment after a disaster occurred. For instance, building damage detection can be automated by applying computer vision techniques to satellite imagery. Such models operate in a multi-domain setting: every disaster is inherently different (new geolocation, unique circumstances), and models must be robust to a shift in distribution between disaster imagery available for training and the images of the new event. Accordingly, estimating real-world performance requires an out-of-domain (OOD) test set. However, building damage detection models have so far been evaluated mostly in the simpler yet unrealistic in-distribution (IID) test setting. Here we argue that future work should focus on the OOD regime instead. We assess OOD performance of two competitive damage detection models and find that existing state-of-the-art models show a substantial generalization gap: their performance drops when evaluated OOD on new disasters not used during training. Moreover, IID performance is not predictive of OOD performance, rendering current benchmarks uninformative about real-world performance. Code and model weights are available at https://github.com/ecker-lab/robust-bdd.

cs.CV↗