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Alexander P. Rockhill

Publications and source records attributed to Alexander P. Rockhill.

2 recordsLinked to original sources

mach: ultrafast ultrasound beamforming

Purpose: Volumetric ultrafast ultrasound produces massive datasets with high frame rates, dense reconstruction grids, and large channel counts. Beamforming computational demands limit research throughput and prevent real-time applications in emerging modalities such as elastography, functional neuroimaging, and microscopy. Approach: We developed mach, an open-source, GPU-accelerated beamformer with a highly optimized delay-and-sum CUDA kernel and an accessible Python interface. mach uses a hybrid delay computation strategy that substantially reduces memory overhead compared to fully precomputed approaches. The CUDA implementation optimizes memory layout for coalesced access and reuses delay computations across frames via shared memory. We benchmarked mach on the PyMUST rotating disk dataset and validated numerical accuracy against existing open-source beamformers. Results: mach processes 1.1 trillion points per second on a consumer-grade GPU, achieving $>$10$\times$ faster performance than existing open-source GPU beamformers. On the PyMUST rotating disk benchmark, mach completes reconstruction in 0.23~ms, 6$\times$ faster than the acoustic round-trip time to the imaging depth. Validation against other beamformers confirms numerical accuracy with errors below $-60$~dB for Power Doppler and $-120$~dB for B-mode. Conclusions: mach achieves 1.1 trillion points per second throughput, enabling real-time 3D ultrafast ultrasound reconstruction for the first time on consumer-grade hardware. By eliminating the beamforming bottleneck, mach enables real-time applications such as 3D functional neuroimaging, intraoperative guidance, and ultrasound localization microscopy. mach is freely available at https://github.com/Forest-Neurotech/mach

physics.med-ph

The Past, Present, and Future of the Brain Imaging Data Structure (BIDS)

The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown over time. We outline the principles behind the project, the mechanisms by which it has been extended, and some of the challenges being addressed as it evolves. We also discuss the lessons learned through the project, with the aim of enabling researchers in other domains to learn from the success of BIDS.

q-bio.OT