arXiv subjects

Alexander Wong

Publications and source records attributed to Alexander Wong.

At least 109 records · Page 6Linked to original sources

arXiv2022

MAPLE-X: Latency Prediction with Explicit Microprocessor Prior Knowledge

Deep neural network (DNN) latency characterization is a time-consuming process and adds significant cost to Neural Architecture Search (NAS) processes when searching for efficient convolutional neural networks for embedded vision applications. DNN Latency is a hardware dependent metric and requires direct measurement or inference on target hardware. A recently introduced latency estimation technique known as MAPLE predicts DNN execution time on previously unseen hardware devices by using hardware performance counters. Leveraging these hardware counters in the form of an implicit prior, MAPLE achieves state-of-the-art performance in latency prediction. Here, we propose MAPLE-X which extends MAPLE by incorporating explicit prior knowledge of hardware devices and DNN architecture latency to better account for model stability and robustness. First, by identifying DNN architectures that exhibit a similar latency to each other, we can generate multiple virtual examples to significantly improve the accuracy over MAPLE. Secondly, the hardware specifications are used to determine the similarity between training and test hardware to emphasize training samples captured from comparable devices (domains) and encourages improved domain alignment. Experimental results using a convolution neural network NAS benchmark across different types of devices, including an Intel processor that is now used for embedded vision applications, demonstrate a 5% improvement over MAPLE and 9% over HELP. Furthermore, we include ablation studies to independently assess the benefits of virtual examples and hardware-based sample importance.

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arXiv2022

COVID-Net UV: An End-to-End Spatio-Temporal Deep Neural Network Architecture for Automated Diagnosis of COVID-19 Infection from Ultrasound Videos

Besides vaccination, as an effective way to mitigate the further spread of COVID-19, fast and accurate screening of individuals to test for the disease is yet necessary to ensure public health safety. We propose COVID-Net UV, an end-to-end hybrid spatio-temporal deep neural network architecture, to detect COVID-19 infection from lung point-of-care ultrasound videos captured by convex transducers. COVID-Net UV comprises a convolutional neural network that extracts spatial features and a recurrent neural network that learns temporal dependence. After careful hyperparameter tuning, the network achieves an average accuracy of 94.44% with no false-negative cases for COVID-19 cases. The goal with COVID-Net UV is to assist front-line clinicians in the fight against COVID-19 via accelerating the screening of lung point-of-care ultrasound videos and automatic detection of COVID-19 positive cases.

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arXiv2022

COVID-Net US-X: Enhanced Deep Neural Network for Detection of COVID-19 Patient Cases from Convex Ultrasound Imaging Through Extended Linear-Convex Ultrasound Augmentation Learning

As the global population continues to face significant negative impact by the on-going COVID-19 pandemic, there has been an increasing usage of point-of-care ultrasound (POCUS) imaging as a low-cost and effective imaging modality of choice in the COVID-19 clinical workflow. A major barrier with widespread adoption of POCUS in the COVID-19 clinical workflow is the scarcity of expert clinicians that can interpret POCUS examinations, leading to considerable interest in deep learning-driven clinical decision support systems to tackle this challenge. A major challenge to building deep neural networks for COVID-19 screening using POCUS is the heterogeneity in the types of probes used to capture ultrasound images (e.g., convex vs. linear probes), which can lead to very different visual appearances. In this study, we explore the impact of leveraging extended linear-convex ultrasound augmentation learning on producing enhanced deep neural networks for COVID-19 assessment, where we conduct data augmentation on convex probe data alongside linear probe data that have been transformed to better resemble convex probe data. Experimental results using an efficient deep columnar anti-aliased convolutional neural network designed via a machined-driven design exploration strategy (which we name COVID-Net US-X) show that the proposed extended linear-convex ultrasound augmentation learning significantly increases performance, with a gain of 5.1% in test accuracy and 13.6% in AUC.

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arXiv2022

MAPLE-Edge: A Runtime Latency Predictor for Edge Devices

Neural Architecture Search (NAS) has enabled automatic discovery of more efficient neural network architectures, especially for mobile and embedded vision applications. Although recent research has proposed ways of quickly estimating latency on unseen hardware devices with just a few samples, little focus has been given to the challenges of estimating latency on runtimes using optimized graphs, such as TensorRT and specifically for edge devices. In this work, we propose MAPLE-Edge, an edge device-oriented extension of MAPLE, the state-of-the-art latency predictor for general purpose hardware, where we train a regression network on architecture-latency pairs in conjunction with a hardware-runtime descriptor to effectively estimate latency on a diverse pool of edge devices. Compared to MAPLE, MAPLE-Edge can describe the runtime and target device platform using a much smaller set of CPU performance counters that are widely available on all Linux kernels, while still achieving up to +49.6% accuracy gains against previous state-of-the-art baseline methods on optimized edge device runtimes, using just 10 measurements from an unseen target device. We also demonstrate that unlike MAPLE which performs best when trained on a pool of devices sharing a common runtime, MAPLE-Edge can effectively generalize across runtimes by applying a trick of normalizing performance counters by the operator latency, in the measured hardware-runtime descriptor. Lastly, we show that for runtimes exhibiting lower than desired accuracy, performance can be boosted by collecting additional samples from the target device, with an extra 90 samples translating to gains of nearly +40%.

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arXiv2022

LightDefectNet: A Highly Compact Deep Anti-Aliased Attention Condenser Neural Network Architecture for Light Guide Plate Surface Defect Detection

Light guide plates are essential optical components widely used in a diverse range of applications ranging from medical lighting fixtures to back-lit TV displays. An essential step in the manufacturing of light guide plates is the quality inspection of defects such as scratches, bright/dark spots, and impurities. This is mainly done in industry through manual visual inspection for plate pattern irregularities, which is time-consuming and prone to human error and thus act as a significant barrier to high-throughput production. Advances in deep learning-driven computer vision has led to the exploration of automated visual quality inspection of light guide plates to improve inspection consistency, accuracy, and efficiency. However, given the cost constraints in visual inspection scenarios, the widespread adoption of deep learning-driven computer vision methods for inspecting light guide plates has been greatly limited due to high computational requirements. In this study, we explore the utilization of machine-driven design exploration with computational and "best-practices" constraints as well as L$_1$ paired classification discrepancy loss to create LightDefectNet, a highly compact deep anti-aliased attention condenser neural network architecture tailored specifically for light guide plate surface defect detection in resource-constrained scenarios. Experiments show that LightDetectNet achieves a detection accuracy of $\sim$98.2% on the LGPSDD benchmark while having just 770K parameters ($\sim$33$\times$ and $\sim$6.9$\times$ lower than ResNet-50 and EfficientNet-B0, respectively) and $\sim$93M FLOPs ($\sim$88$\times$ and $\sim$8.4$\times$ lower than ResNet-50 and EfficientNet-B0, respectively) and $\sim$8.8$\times$ faster inference speed than EfficientNet-B0 on an embedded ARM processor.

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arXiv2022

CellDefectNet: A Machine-designed Attention Condenser Network for Electroluminescence-based Photovoltaic Cell Defect Inspection

Photovoltaic cells are electronic devices that convert light energy to electricity, forming the backbone of solar energy harvesting systems. An essential step in the manufacturing process for photovoltaic cells is visual quality inspection using electroluminescence imaging to identify defects such as cracks, finger interruptions, and broken cells. A big challenge faced by industry in photovoltaic cell visual inspection is the fact that it is currently done manually by human inspectors, which is extremely time consuming, laborious, and prone to human error. While deep learning approaches holds great potential to automating this inspection, the hardware resource-constrained manufacturing scenario makes it challenging for deploying complex deep neural network architectures. In this work, we introduce CellDefectNet, a highly efficient attention condenser network designed via machine-driven design exploration specifically for electroluminesence-based photovoltaic cell defect detection on the edge. We demonstrate the efficacy of CellDefectNet on a benchmark dataset comprising of a diversity of photovoltaic cells captured using electroluminescence imagery, achieving an accuracy of ~86.3% while possessing just 410K parameters (~13$\times$ lower than EfficientNet-B0, respectively) and ~115M FLOPs (~12$\times$ lower than EfficientNet-B0) and ~13$\times$ faster on an ARM Cortex A-72 embedded processor when compared to EfficientNet-B0.

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arXiv2022

ICDBigBird: A Contextual Embedding Model for ICD Code Classification

The International Classification of Diseases (ICD) system is the international standard for classifying diseases and procedures during a healthcare encounter and is widely used for healthcare reporting and management purposes. Assigning correct codes for clinical procedures is important for clinical, operational, and financial decision-making in healthcare. Contextual word embedding models have achieved state-of-the-art results in multiple NLP tasks. However, these models have yet to achieve state-of-the-art results in the ICD classification task since one of their main disadvantages is that they can only process documents that contain a small number of tokens which is rarely the case with real patient notes. In this paper, we introduce ICDBigBird a BigBird-based model which can integrate a Graph Convolutional Network (GCN), that takes advantage of the relations between ICD codes in order to create 'enriched' representations of their embeddings, with a BigBird contextual model that can process larger documents. Our experiments on a real-world clinical dataset demonstrate the effectiveness of our BigBird-based model on the ICD classification task as it outperforms the previous state-of-the-art models.

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arXiv2022

FenceNet: Fine-grained Footwork Recognition in Fencing

Current data analysis for the Canadian Olympic fencing team is primarily done manually by coaches and analysts. Due to the highly repetitive, yet dynamic and subtle movements in fencing, manual data analysis can be inefficient and inaccurate. We propose FenceNet as a novel architecture to automate the classification of fine-grained footwork techniques in fencing. FenceNet takes 2D pose data as input and classifies actions using a skeleton-based action recognition approach that incorporates temporal convolutional networks to capture temporal information. We train and evaluate FenceNet on the Fencing Footwork Dataset (FFD), which contains 10 fencers performing 6 different footwork actions for 10-11 repetitions each (652 total videos). FenceNet achieves 85.4% accuracy under 10-fold cross-validation, where each fencer is left out as the test set. This accuracy is within 1% of the current state-of-the-art method, JLJA (86.3%), which selects and fuses features engineered from skeleton data, depth videos, and inertial measurement units. BiFenceNet, a variant of FenceNet that captures the "bidirectionality" of human movement through two separate networks, achieves 87.6% accuracy, outperforming JLJA. Since neither FenceNet nor BiFenceNet requires data from wearable sensors, unlike JLJA, they could be directly applied to most fencing videos, using 2D pose data as input extracted from off-the-shelf 2D human pose estimators. In comparison to JLJA, our methods are also simpler as they do not require manual feature engineering, selection, or fusion.

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arXiv2022

LexSubCon: Integrating Knowledge from Lexical Resources into Contextual Embeddings for Lexical Substitution

Lexical substitution is the task of generating meaningful substitutes for a word in a given textual context. Contextual word embedding models have achieved state-of-the-art results in the lexical substitution task by relying on contextual information extracted from the replaced word within the sentence. However, such models do not take into account structured knowledge that exists in external lexical databases. We introduce LexSubCon, an end-to-end lexical substitution framework based on contextual embedding models that can identify highly accurate substitute candidates. This is achieved by combining contextual information with knowledge from structured lexical resources. Our approach involves: (i) introducing a novel mix-up embedding strategy in the creation of the input embedding of the target word through linearly interpolating the pair of the target input embedding and the average embedding of its probable synonyms; (ii) considering the similarity of the sentence-definition embeddings of the target word and its proposed candidates; and, (iii) calculating the effect of each substitution in the semantics of the sentence through a fine-tuned sentence similarity model. Our experiments show that LexSubCon outperforms previous state-of-the-art methods on LS07 and CoInCo benchmark datasets that are widely used for lexical substitution tasks.

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arXiv2022

Improving Classification Model Performance on Chest X-Rays through Lung Segmentation

Chest radiography is an effective screening tool for diagnosing pulmonary diseases. In computer-aided diagnosis, extracting the relevant region of interest, i.e., isolating the lung region of each radiography image, can be an essential step towards improved performance in diagnosing pulmonary disorders. Methods: In this work, we propose a deep learning approach to enhance abnormal chest x-ray (CXR) identification performance through segmentations. Our approach is designed in a cascaded manner and incorporates two modules: a deep neural network with criss-cross attention modules (XLSor) for localizing lung region in CXR images and a CXR classification model with a backbone of a self-supervised momentum contrast (MoCo) model pre-trained on large-scale CXR data sets. The proposed pipeline is evaluated on Shenzhen Hospital (SH) data set for the segmentation module, and COVIDx data set for both segmentation and classification modules. Novel statistical analysis is conducted in addition to regular evaluation metrics for the segmentation module. Furthermore, the results of the optimized approach are analyzed with gradient-weighted class activation mapping (Grad-CAM) to investigate the rationale behind the classification decisions and to interpret its choices. Results and Conclusion: Different data sets, methods, and scenarios for each module of the proposed pipeline are examined for designing an optimized approach, which has achieved an accuracy of 0.946 in distinguishing abnormal CXR images (i.e., Pneumonia and COVID-19) from normal ones. Numerical and visual validations suggest that applying automated segmentation as a pre-processing step for classification improves the generalization capability and the performance of the classification models.

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arXiv2021

Performance or Trust? Why Not Both. Deep AUC Maximization with Self-Supervised Learning for COVID-19 Chest X-ray Classifications

Effective representation learning is the key in improving model performance for medical image analysis. In training deep learning models, a compromise often must be made between performance and trust, both of which are essential for medical applications. Moreover, models optimized with cross-entropy loss tend to suffer from unwarranted overconfidence in the majority class and over-cautiousness in the minority class. In this work, we integrate a new surrogate loss with self-supervised learning for computer-aided screening of COVID-19 patients using radiography images. In addition, we adopt a new quantification score to measure a model's trustworthiness. Ablation study is conducted for both the performance and the trust on feature learning methods and loss functions. Comparisons show that leveraging the new surrogate loss on self-supervised models can produce label-efficient networks that are both high-performing and trustworthy.

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arXiv2021

M2A: Motion Aware Attention for Accurate Video Action Recognition

Advancements in attention mechanisms have led to significant performance improvements in a variety of areas in machine learning due to its ability to enable the dynamic modeling of temporal sequences. A particular area in computer vision that is likely to benefit greatly from the incorporation of attention mechanisms in video action recognition. However, much of the current research's focus on attention mechanisms have been on spatial and temporal attention, which are unable to take advantage of the inherent motion found in videos. Motivated by this, we develop a new attention mechanism called Motion Aware Attention (M2A) that explicitly incorporates motion characteristics. More specifically, M2A extracts motion information between consecutive frames and utilizes attention to focus on the motion patterns found across frames to accurately recognize actions in videos. The proposed M2A mechanism is simple to implement and can be easily incorporated into any neural network backbone architecture. We show that incorporating motion mechanisms with attention mechanisms using the proposed M2A mechanism can lead to a +15% to +26% improvement in top-1 accuracy across different backbone architectures, with only a small increase in computational complexity. We further compared the performance of M2A with other state-of-the-art motion and attention mechanisms on the Something-Something V1 video action recognition benchmark. Experimental results showed that M2A can lead to further improvements when combined with other temporal mechanisms and that it outperforms other motion-only or attention-only mechanisms by as much as +60% in top-1 accuracy for specific classes in the benchmark.

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arXiv2021

Enhancing Food Intake Tracking in Long-Term Care with Automated Food Imaging and Nutrient Intake Tracking (AFINI-T) Technology

Half of long-term care (LTC) residents are malnourished increasing hospitalization, mortality, morbidity, with lower quality of life. Current tracking methods are subjective and time consuming. This paper presents the automated food imaging and nutrient intake tracking (AFINI-T) technology designed for LTC. We propose a novel convolutional autoencoder for food classification, trained on an augmented UNIMIB2016 dataset and tested on our simulated LTC food intake dataset (12 meal scenarios; up to 15 classes each; top-1 classification accuracy: 88.9%; mean intake error: -0.4 mL$\pm$36.7 mL). Nutrient intake estimation by volume was strongly linearly correlated with nutrient estimates from mass ($r^2$ 0.92 to 0.99) with good agreement between methods ($σ$= -2.7 to -0.01; zero within each of the limits of agreement). The AFINI-T approach is a deep-learning powered computational nutrient sensing system that may provide a novel means for more accurately and objectively tracking LTC resident food intake to support and prevent malnutrition tracking strategies.

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arXiv2021

COVID-Net Clinical ICU: Enhanced Prediction of ICU Admission for COVID-19 Patients via Explainability and Trust Quantification

The COVID-19 pandemic continues to have a devastating global impact, and has placed a tremendous burden on struggling healthcare systems around the world. Given the limited resources, accurate patient triaging and care planning is critical in the fight against COVID-19, and one crucial task within care planning is determining if a patient should be admitted to a hospital's intensive care unit (ICU). Motivated by the need for transparent and trustworthy ICU admission clinical decision support, we introduce COVID-Net Clinical ICU, a neural network for ICU admission prediction based on patient clinical data. Driven by a transparent, trust-centric methodology, the proposed COVID-Net Clinical ICU was built using a clinical dataset from Hospital Sirio-Libanes comprising of 1,925 COVID-19 patient records, and is able to predict when a COVID-19 positive patient would require ICU admission with an accuracy of 96.9% to facilitate better care planning for hospitals amidst the on-going pandemic. We conducted system-level insight discovery using a quantitative explainability strategy to study the decision-making impact of different clinical features and gain actionable insights for enhancing predictive performance. We further leveraged a suite of trust quantification metrics to gain deeper insights into the trustworthiness of COVID-Net Clinical ICU. By digging deeper into when and why clinical predictive models makes certain decisions, we can uncover key factors in decision making for critical clinical decision support tasks such as ICU admission prediction and identify the situations under which clinical predictive models can be trusted for greater accountability.

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arXiv2021

TinyDefectNet: Highly Compact Deep Neural Network Architecture for High-Throughput Manufacturing Visual Quality Inspection

A critical aspect in the manufacturing process is the visual quality inspection of manufactured components for defects and flaws. Human-only visual inspection can be very time-consuming and laborious, and is a significant bottleneck especially for high-throughput manufacturing scenarios. Given significant advances in the field of deep learning, automated visual quality inspection can lead to highly efficient and reliable detection of defects and flaws during the manufacturing process. However, deep learning-driven visual inspection methods often necessitate significant computational resources, thus limiting throughput and act as a bottleneck to widespread adoption for enabling smart factories. In this study, we investigated the utilization of a machine-driven design exploration approach to create TinyDefectNet, a highly compact deep convolutional network architecture tailored for high-throughput manufacturing visual quality inspection. TinyDefectNet comprises of just ~427K parameters and has a computational complexity of ~97M FLOPs, yet achieving a detection accuracy of a state-of-the-art architecture for the task of surface defect detection on the NEU defect benchmark dataset. As such, TinyDefectNet can achieve the same level of detection performance at 52$\times$ lower architectural complexity and 11x lower computational complexity. Furthermore, TinyDefectNet was deployed on an AMD EPYC 7R32, and achieved 7.6x faster throughput using the native Tensorflow environment and 9x faster throughput using AMD ZenDNN accelerator library. Finally, explainability-driven performance validation strategy was conducted to ensure correct decision-making behaviour was exhibited by TinyDefectNet to improve trust in its usage by operators and inspectors.

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arXiv2021

MEDUSA: Multi-scale Encoder-Decoder Self-Attention Deep Neural Network Architecture for Medical Image Analysis

Medical image analysis continues to hold interesting challenges given the subtle characteristics of certain diseases and the significant overlap in appearance between diseases. In this work, we explore the concept of self-attention for tackling such subtleties in and between diseases. To this end, we introduce MEDUSA, a multi-scale encoder-decoder self-attention mechanism tailored for medical image analysis. While self-attention deep convolutional neural network architectures in existing literature center around the notion of multiple isolated lightweight attention mechanisms with limited individual capacities being incorporated at different points in the network architecture, MEDUSA takes a significant departure from this notion by possessing a single, unified self-attention mechanism with significantly higher capacity with multiple attention heads feeding into different scales in the network architecture. To the best of the authors' knowledge, this is the first "single body, multi-scale heads" realization of self-attention and enables explicit global context amongst selective attention at different levels of representational abstractions while still enabling differing local attention context at individual levels of abstractions. With MEDUSA, we obtain state-of-the-art performance on multiple challenging medical image analysis benchmarks including COVIDx, RSNA RICORD, and RSNA Pneumonia Challenge when compared to previous work. Our MEDUSA model is publicly available.

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arXiv2021

EvoPose2D: Pushing the Boundaries of 2D Human Pose Estimation using Accelerated Neuroevolution with Weight Transfer

Neural architecture search has proven to be highly effective in the design of efficient convolutional neural networks that are better suited for mobile deployment than hand-designed networks. Hypothesizing that neural architecture search holds great potential for human pose estimation, we explore the application of neuroevolution, a form of neural architecture search inspired by biological evolution, in the design of 2D human pose networks for the first time. Additionally, we propose a new weight transfer scheme that enables us to accelerate neuroevolution in a flexible manner. Our method produces network designs that are more efficient and more accurate than state-of-the-art hand-designed networks. In fact, the generated networks process images at higher resolutions using less computation than previous hand-designed networks at lower resolutions, allowing us to push the boundaries of 2D human pose estimation. Our base network designed via neuroevolution, which we refer to as EvoPose2D-S, achieves comparable accuracy to SimpleBaseline while being 50% faster and 12.7x smaller in terms of file size. Our largest network, EvoPose2D-L, achieves new state-of-the-art accuracy on the Microsoft COCO Keypoints benchmark, is 4.3x smaller than its nearest competitor, and has similar inference speed. The code is publicly available at https://github.com/wmcnally/evopose2d.

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arXiv2021

COVID-Net MLSys: Designing COVID-Net for the Clinical Workflow

As the COVID-19 pandemic continues to devastate globally, one promising field of research is machine learning-driven computer vision to streamline various parts of the COVID-19 clinical workflow. These machine learning methods are typically stand-alone models designed without consideration for the integration necessary for real-world application workflows. In this study, we take a machine learning and systems (MLSys) perspective to design a system for COVID-19 patient screening with the clinical workflow in mind. The COVID-Net system is comprised of the continuously evolving COVIDx dataset, COVID-Net deep neural network for COVID-19 patient detection, and COVID-Net S deep neural networks for disease severity scoring for COVID-19 positive patient cases. The deep neural networks within the COVID-Net system possess state-of-the-art performance, and are designed to be integrated within a user interface (UI) for clinical decision support with automatic report generation to assist clinicians in their treatment decisions.

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