arXiv subjects

Alexandra Koulouri

Publications and source records attributed to Alexandra Koulouri.

16 recordsLinked to original sources

arXiv2026

Overview of Bayesian Solvers in EEG Distributed Source Models: Prior Selection, Algorithmic Implementation, and Depth Bias Reduction

Electroencephalography (EEG) source imaging aims to reconstruct the spatial distribution of neural activity within the brain from non-invasive scalp measurements. This inverse problem is severely ill-posed due to the low spatial resolution of EEG and the presence of measurement noise, necessitating robust regularization techniques. Bayesian approaches provide a principled framework for incorporating prior knowledge into the solution, where regularization naturally arises through prior distributions and their associated hyperparameters. In this work, we provide an overview of key Bayesian methods for EEG source imaging based on Gaussian, Laplace, and group Laplace priors, with particular emphasis on hierarchical models that promote sparsity. We analyze the connections between these hierarchical formulations and classical optimization techniques, and provide an analytical description of their implementation using expectation -maximization and alternating optimization algorithms. To address the issue of depth bias where deeper sources are systematically underestimated or mislocalized - we extend a statistical signal-to-noise ratio (SNR) framework to derive depth-weighted priors that account for differences in how strongly sources at different depths are reflected in the measurements. Finally, we illustrate the behaviour of the considered models through simulation studies involving sources at varying depths. The results highlight the impact of prior selection and depth weighting on reconstruction accuracy and demonstrate the importance of informed model design for depth-sensitive EEG source localization.

math.NA↗

arXiv2025

Tracking EEG Thalamic and Cortical Focal Brain Activity using Standardized Kalman Filtering with Kinematics Modeling

Kalman filtering has proven to be effective for estimating brain activity using EEG recordings. In particular, the introduced post hoc standardization step of the algorithm, inspired by the sLORETA time-invariant method, reduces the depth bias and thus allows the estimation to appear at the correct depth from the electrode surface. In the current work, we propose first and second-order kinematic evolution models, where the state-space vector includes not only the dipolar source activity but also its velocity and acceleration. Compared to our previous study, this motion model yields smoother and more physically plausible estimates of brain activity even when the measurement noise is high, for both superficial and deep sources. In addition, we introduce a tunable power parameter that enhances the computational efficiency of the algorithm. Our simulation study, which involves thalamic and cortical activity in the somatosensory region, demonstrates that accurate estimation and tracking of both superficial and deep brain activity are feasible.

math.NA↗

arXiv2025

The Effect of Prior Parameters on Standardized Kalman Filter-Based EEG Source Localization

EEG Source localization is a critical tool in neuroscience, with applications ranging from epilepsy diagnosis to cognitive research. It involves solving an ill-posed inverse problem that lacks a unique solution unless constrained by prior knowledge. The Bayesian framework enables the incorporation of such knowledge, typically encoded through prior models. Various algorithms have been proposed for source localization, and they differ significantly in how prior knowledge is incorporated. Some approaches rely on anatomical or functional constraints, while others use statistical distributions or sampling-based techniques. In this landscape, the Standardized Kalman Filter (SKF) represents a dynamic Bayesian approach that integrates temporal modeling with a Gaussian prior structure. It addresses the depth bias, a common limitation in source localization, through a post-hoc standardization step that equalizes sensitivity across cortical depths and makes deep activity detection feasible. This study focuses on the development and optimization of Gaussian prior models within the SKF framework for simultaneous cortical and sub-cortical activity detection. Synthetic data similar to the P20 / N20 component of the somatosensory evoked potentials (SEP) was used to identify effective prior parameter configurations for reconstructing both deep and superficial sources under different noise levels. We also investigated the role of RTS smoothing in enhancing source separability. Our results indicate that raising the standardization exponent to 1.25, along with smoothing, significantly improves depth localization accuracy at low noise levels.

math.NA↗

arXiv2025

Bayesian Model Parameter Learning in Linear Inverse Problems: Application in EEG Focal Source Imaging

Inverse problems can be described as limited-data problems in which the signal of interest cannot be observed directly. A physics-based forward model that relates the signal with the observations is typically needed. Unfortunately, unknown model parameters and imperfect forward models can undermine the signal recovery. Even though supervised machine learning offers promising avenues to improve the robustness of the solutions, we have to rely on model-based learning when there is no access to ground truth for the training. Here, we studied a linear inverse problem that included an unknown non-linear model parameter and utilized a Bayesian model-based learning approach that allowed signal recovery and subsequently estimation of the model parameter. This approach, called Bayesian Approximation Error approach, employed a simplified model of the physics of the problem augmented with an approximation error term that compensated for the simplification. An error subspace was spanned with the help of the eigenvectors of the approximation error covariance matrix which allowed, alongside the primary signal, simultaneous estimation of the induced error. The estimated error and signal were then used to determine the unknown model parameter. For the model parameter estimation, we tested different approaches: a conditional Gaussian regression, an iterative (model-based) optimization, and a Gaussian process that was modeled with the help of physics-informed learning. In addition, alternating optimization was used as a reference method. As an example application, we focused on the problem of reconstructing brain activity from EEG recordings under the condition that the electrical conductivity of the patient's skull was unknown in the model. Our results demonstrated clear improvements in EEG source localization accuracy and provided feasible estimates for the unknown model parameter, skull conductivity.

eess.SP↗

arXiv2024

Vector tomography for reconstructing electric fields with non-zero divergence in bounded domains

In vector tomography (VT), the aim is to reconstruct an unknown multi-dimensional vector field using line integral data. In the case of a 2-dimensional VT, two types of line integral data are usually required. These data correspond to integration of the parallel and perpendicular projection of the vector field along integration lines. VT methods are non-invasive, non-intrusive and offer more information on the field than classical point measurements; they are typically used to reconstruct divergence-free (or source-free) velocity and flow fields. In this paper, we show that VT can also be used for the reconstruction of fields with non-zero divergence. In particular, we study electric fields generated by dipole sources in bounded domains which arise, for example, in electroencephalography (EEG) source imaging. To the best of our knowledge, VT has not previously been used to reconstruct such fields. We explain in detail the theoretical background, the derivation of the electric field inverse problem and the numerical approximation of the line integrals. We show that fields with non-zero divergence can be reconstructed from the longitudinal measurements with the help of two sparsity constraints that are constructed from the transverse measurements and the vector Laplace operator. As a comparison to EEG source imaging, we note that VT does not require mathematical modelling of the sources. By numerical simulations, we show that the pattern of the electric field can be correctly estimated using VT and the location of the source activity can be determined accurately from the reconstructed magnitudes of the field.

math-ph↗

arXiv2022

Conditionally Exponential Prior in Focal Near- and Far-Field EEG Source Localization via Randomized Multiresolution Scanning (RAMUS)

In this paper, we focus on the inverse problem of reconstructing distributional brain activity with cortical and weakly detectable deep components in non-invasive Electroencephalography. In particular, we aim to generalize the previously extensively used conditionally Gaussian prior (CGP) formalism to achieve distributional reconstructions with higher focality. For this purpose, we introduce as a hierarchical prior, a general exponential distribution, refered to as conditionally exponential prior (CEP). The first-degree CEP corresponds to focality enforcing Laplace prior that suffers from strong depth bias making the deep activity unrecoverable. We sample over multiple resolution levels via RAMUS to reduce this bias as it is known to depend on the resolution of the source space. Moreover, we introduce a procedure based on the physiological a priori knowledge of the brain activity to obtain the shape and scale parameters of the gamma hyperprior that steer the CEP. The posterior estimates are calculated using iterative statistical methods, expectation maximization and iterative alternating sequential algorithm, which we show to be algorithmically similar and to have a close resemblance to the iterative reweighting methods. The performance of CEP is compared with the recent sampling-based dipole localization method Sequential semi-analytic Monte Carlo estimation (SESAME) in numerical experiments of simulated somatosensory evoked potentials related to the human median nerve stimulation. Our results suggest that a hybrid of the first-degree CEP and RAMUS can achieve an accuracy comparable to the second-degree case (CGP) while being more focal. Further, the proposed hybrid is shown to be robust to noise effects and compare well to the dipole reconstructions obtained with SESAME.

math.NA↗

arXiv2021

Real-time Ionospheric Imaging of S4 Scintillation from Limited Data with Parallel Kalman Filters and Smoothness

In this paper, we propose a Bayesian framework to create two dimensional ionospheric images of high spatio-temporal resolution to monitor ionospheric irregularities as measured by the S4 index. Here, we recast the standard Bayesian recursive filtering for a linear Gaussian state-space model, also referred to as the Kalman filter, first by augmenting the (pierce point) observation model with connectivity information stemming from the insight and assumptions/standard modeling about the spatial distribution of the scintillation activity on the ionospheric shell at 350 km altitude. Thus, we achieve to handle the limited spatio-temporal observations. Then, by introducing a set of Kalman filters running in parallel, we mitigate the uncertainty related to a tuning parameter of the proposed augmented model. The output images are a weighted average of the state estimates of the individual filters. We demonstrate our approach by rendering two dimensional real-time ionospheric images of S4 amplitude scintillation at 350 km over South America with temporal resolution of one minute. Furthermore, we employ extra S4 data that was not used in producing these ionospheric images, to check and verify the ability of our images to predict this extra data in particular ionospheric pierce points. Our results show that in areas with a network of ground receivers with a relatively good coverage (e.g. within a couple of kilometers distance) the produced images can provide reliable real-time results. Our proposed algorithmic framework can be readily used to visualize real-time ionospheric images taking as inputs the available scintillation data provided from freely available web-servers.

physics.ao-ph↗

arXiv2020

Adaptive Superresolution in Deconvolution of Sparse Peaks

The aim of this paper is to investigate superresolution in deconvolution driven by sparsity priors. The observed signal is a convolution of an original signal with a continuous kernel.With the prior knowledge that the original signal can be considered as a sparse combination of Dirac delta peaks, we seek to estimate the positions and amplitudes of these peaks by solving a finite dimensional convex problem on a computational grid. Because, the support of the original signal may or may not be on this grid, by studying the discrete deconvolution of sparse peaks using L1-norm sparsity prior, we confirm recent observations that canonically the discrete reconstructions will result in multiple peaks at grid points adjacent to the location of the true peak. Owning to the complexity of this problem, we analyse carefully the de-convolution of single peaks on a grid and gain a strong insight about the dependence of the reconstructed magnitudes on the exact peak location. This in turn allows us to infer further information on recovering the location of the exact peaks i.e. to perform super-resolution. We analyze in detail the possible cases that can appear and based on our theoretical findings, we propose an self-driven adaptive grid approach that allows to perform superresolution in one-dimensional and multi-dimensional spaces. With the view that the current study can provide a further step in the development of more robust algorithms for the detection of single molecules in fluorescence microscopy or identification of characteristic frequencies in spectral analysis, we demonstrate how the proposed approach can recover sparse signals using simulated clusters of point sources (peaks) of low-resolution in one and two-dimensional spaces.

math.OC↗

arXiv2020

Randomized Multiresolution Scanning in Focal and Fast E/MEG Sensing of Brain Activity with a Variable Depth

We focus on electromagnetoencephalography imaging of the neural activity and, in particular, finding a robust estimate for the primary current distribution via the hierarchical Bayesian model (HBM). Our aim is to develop a reasonably fast maximum a posteriori (MAP) estimation technique which would be applicable for both superficial and deep areas without specific a priori knowledge of the number or location of the activity. To enable source distinguishability for any depth, we introduce a randomized multiresolution scanning (RAMUS) approach in which the MAP estimate of the brain activity is varied during the reconstruction process. RAMUS aims to provide a robust and accurate imaging outcome for the whole brain, while maintaining the computational cost on an appropriate level. The inverse gamma (IG) distribution is applied as the primary hyperprior in order to achieve an optimal performance for the deep part of the brain. In this proof-of-the-concept study, we consider the detection of simultaneous thalamic and somatosensory activity via numerically simulated data modeling the 14-20 ms post-stimulus somatosensory evoked potential and field response to electrical wrist stimulation. Both a spherical and realistic model are utilized to analyze the source reconstruction discrepancies. In the numerically examined case, RAMUS was observed to enhance the visibility of deep components and also marginalizing the random effects of the discretization and optimization without a remarkable computation cost. A robust and accurate MAP estimate for the primary current density was obtained in both superficial and deep parts of the brain.

math.NA↗

arXiv2020

Methodology to estimate ionospheric scintillation risk maps and their contribution to position dilution of precision on the ground

Satellite-based communications, navigation systems and many scientific instruments rely on observations of trans-ionospheric signals. The quality of these signals can be deteriorated by ionospheric scintillation which can have detrimental effects on the mentioned applications. Therefore, monitoring of ionospheric scintillation and quantifying its effect on the ground are of significant interest. In this work, we develop a methodology which estimates the scintillation induced ionospheric uncertainties in the sky and translates their impact to the end-users on the ground. First, by using the risk concept from decision theory and by exploiting the intensity and duration of scintillation events (as measured by the S4 index), we estimate ionospheric risk maps that could readily give an initial impression on the effects of scintillation on the satellite-receiver communication. However, to better understand the influence of scintillation on the positioning accuracy on the ground, we formulate a new weighted dilution of precision (WPDOP) measure that incorporates the ionospheric scintillation risks as weighting factors for the given satellite-receiver constellations. These weights depend implicitly on scintillation intensity and duration thresholds which can be specified by the end-user based on the sensitivity of the application, for example. We demonstrate our methodology by using scintillation data from South America, and produce ionospheric risk maps which illustrate broad scintillation activity, especially at the equatorial anomaly. Moreover, we construct ground maps of WPDOP over a grid of hypothetical receivers which reveal that ionospheric scintillation can also affect such regions of the continent that are not exactly under the observed ionospheric scintillation structures. Particularly, this is evident in cases when only the Global Positioning System (GPS) is available.

physics.ao-ph↗

arXiv2020

Electrical Impedance Tomography with Box Constraint for Skull Conductivity Estimation

Unknown electric conductivities of human tissues is a common issue in medical engineering. Electrical impedance tomography (EIT) is an imaging modality that can be used to determine these conductivities in vivo from boundary measurements. In this paper, we demonstrate that local conductivity values of different skull segments can be solved from EIT measurements with the help of a box constraint. Based on our numerical results, the accuracy of the results depended on the locations of the current carrying electrodes and the signal to noise ratio of the measurements. Particularly, the conductivity values of the skull segments that located below the current carrying electrodes were reconstructed more accurately.

physics.med-ph↗

arXiv2020

Simultaneous Skull Conductivity and Focal Source Imaging from EEG Recordings with the help of Bayesian Uncertainty Modelling

The electroencephalography (EEG) source imaging problem is very sensitive to the electrical modelling of the skull of the patient under examination. Unfortunately, the currently available EEG devices and their embedded software do not take this into account; instead, it is common to use a literature-based skull conductivity parameter. In this paper, we propose a statistical method based on the Bayesian approximation error approach to compensate for source imaging errors due to the unknown skull conductivity and, simultaneously, to compute a low-order estimate for the actual skull conductivity value. By using simulated EEG data that corresponds to focal source activity, we demonstrate the potential of the method to reconstruct the underlying focal sources and low-order errors induced by the unknown skull conductivity. Subsequently, the estimated errors are used to approximate the skull conductivity. The results indicate clear improvements in the source localization accuracy and feasible skull conductivity estimates.

cs.LG↗

arXiv2020

Position Dilution of Precision: a Bayesian point of view

The expected position error in many cases is far from feasible to be estimated experimentally using real satellite measurements which makes the model-based position dilution of precision (PDOP) crucial in positioning and navigation applications. In the following text we derive the relationship between PDOP and position error and we explain that this relationship holds as long as the model for the observation errors represents the true sources of errors.

stat.AP↗

arXiv2017

Overcoming the ill-posedness through discretization in vector tomography: Reconstruction of irrotational vector fields

Vector tomography methods intend to reconstruct and visualize vector fields in restricted domains by measuring line integrals of projections of these vector fields. Here, we deal with the reconstruction of irrotational vector functions from boundary measurements. As the majority of inverse problems, vector field recovery is an ill posed in the continuous domain and therefore further assumptions, measurements and constraints should be imposed for the full vector field estimation. The reconstruction idea in the discrete domain relies on solving a numerical system of linear equations which derives from the approximation of the line integrals along lines which trace the bounded domain. This work presents an extensive description of a vector field recovery, the fundamental assumptions and the ill conditioning of this inverse problem. More importantly we show that this inverse problem is regularized via the domain discretization, i.e. we show that the recovery of an irrotational vector field within a discrete grid employing a finite set of longitudinal line integrals, leads to a consistent linear system which has bounded solution errors. We elaborate on the estimation of the solution's error and we prove that this relative error is finite and therefore a stable vector field reconstruction is ensured. Such theoretical aspects are critical for future implementations of vector tomography in practical applications like the inverse bioelectric field problem. We validate our theoretical results by performing simulations that reconstruct smooth irrotational fields based solely on a finite number of boundary measurements and without the need of any additional or prior information (e.g. transversal line integrals or source free assumption).

q-bio.QM↗

arXiv2017

Bayesian Modelling of Skull Conductivity Uncertainties in EEG Source Imaging

Knowing the correct skull conductivity is crucial for the accuracy of EEG source imaging, but unfortunately, its true value, which is inter- and intra-individually varying, is difficult to determine. In this paper, we propose a statistical method based on the Bayesian approximation error approach to compensate for source imaging errors related to erroneous skull conductivity. We demonstrate the potential of the approach by simulating EEG data of focal source activity and using the dipole scan algorithm and a sparsity promoting prior to reconstruct the underlying sources. The results suggest that the greatest improvements with the proposed method can be achieved when the focal sources are close to the skull.

physics.med-ph↗

arXiv2017

Prior Variances and Depth Un-Biased Estimators in EEG Focal Source Imaging

In electroencephalography (EEG) source imaging, the inverse source estimates are depth biased in such a way that their maxima are often close to the sensors. This depth bias can be quantified by inspecting the statistics (mean and co-variance) of these estimates. In this paper, we find weighting factors within a Bayesian framework for the used L1/L2 sparsity prior that the resulting maximum a posterior (MAP) estimates do not favor any particular source location. Due to the lack of an analytical expression for the MAP estimate when this sparsity prior is used, we solve the weights indirectly. First, we calculate the Gaussian prior variances that lead to depth un-biased maximum a posterior (MAP) estimates. Subsequently, we approximate the corresponding weight factors in the sparsity prior based on the solved Gaussian prior variances. Finally, we reconstruct focal source configurations using the sparsity prior with the proposed weights and two other commonly used choices of weights that can be found in literature.

physics.med-ph↗