arXiv subjects

Alice Wu

Publications and source records attributed to Alice Wu.

10 recordsLinked to original sources

arXiv2026

ULMShare: A Large-Scale In Vivo Ultrasound Localization Microscopy Dataset for Microvascular Imaging

Ultrasound Localization Microscopy (ULM) enables microscopic imaging of the cerebral microvasculature in vivo, but relies on a multi-stage processing pipeline in which acquisition settings and reconstruction processes strongly influence the final output. Existing public datasets remain sparse, restricting rigorous evaluation and slowing progress in algorithm development, including emerging machine-learning approaches, which by design require large quantities of data to be robust and reliable. We introduce \textbf{ULMShare}, an open-access dataset of 99 whole-brain transcranial ULM acquisitions from 61 healthy mice (36 females, 22 males, 3 unknown; mean age: $8.2 \pm 5.5$ weeks; mean weight: $17.7 \pm 4.2$ g), for a total of 30TB of raw data. The dataset spans three experimental procedures, multiple injection and anesthesia protocols, two ultrasound probes, and different imaging planes and orientations. Each acquisition includes raw ultrasonic data, detailed metadata, an illustrative reconstruction and the corresponding microbubble trajectories. Alongside the data, we report vascular saturation, Fourier Ring Correlation, and track-length statistics, plus expert visual gradings. ULMShare provides a broad, standardized and publicly available resource for method development, validation, and benchmarking. The full dataset is available on the Federated Research Data Repository and additional resources are hosted on the ULMShare Github repository.

physics.med-ph↗

arXiv2026

Fine-Tuned LLM as a Complementary Predictor Improving Ads System

Recommendation systems power engagement and monetization across feeds, ads, and short-video platforms, but translating the latest advances in Large Language Models into Recommendation Systems (RecSys) gains remains rare, particularly in advertising and production-scale real-world industry setups. Prior real-world LLM successes typically fall into three buckets: (a) generative retrieval that directly predicts the next items for candidate generation, (b) late-stage re-ranking that uses LLMs, and (c) auxiliary signal enrichment with LLMs. We introduce a complementary paradigm for ads: a fine-tuned open-source LLM used not as a ranker, but as an ads-specific ancillary predictor, forecasting likely advertisers from user profiles and histories. This LLM-driven advertiser prediction augments conventional candidate generation and provides informative priors to downstream ranking. Developed in a large-scale production advertising system, our approach produces substantial offline improvements and measurable online business impact, demonstrating that LLM world knowledge and predictive capacity can be efficiently harnessed. Beyond validating LLMs for ads applications, our results show that targeted ancillary predictions can unlock end-to-end gains across both retrieval and late-stage ranking, offering a practical path to LLM-enhanced recommendation at scale.

cs.IR↗

arXiv2025

The-Bodega: A Matlab Toolbox for Biologically Dynamic Microbubble Simulations on Realistic Hemodynamic Microvascular Graphs

The-Bodega is a Matlab-based toolbox for simulating ground-truth datasets for Ultrasound Localization Microscopy (ULM)-a super resolution imaging technique that resolves microvessels by systematically tracking microbubbles flowing through the microvasculature. The-Bodega enables open-source simulation of stochastic microbubble dynamics through anatomically complex vascular graphs and features a quasi-automated pipeline for generating ground-truth ultrasound data from simple vascular inputs. It incorporates sequential Monte Carlo simulations augmented with Poiseuille flow distributions and dynamic pulsatile flow. A key novelty of our framework is its flexibility to accommodate arbitrary vascular architectures and benchmark common ULM algorithms, such as Fourier Ring Correlation and Singular Value Decomposition (SVD) spatiotemporal filtering, on realistic hemodynamic digital phantoms. The-Bodega supports consistent microbubble-to-ultrasound simulations across domains ranging from mouse brains to human hearts and automatically leverages available CPU/GPU parallelization to improve computational efficiency. We demonstrate its versatility in applications including image quality assessment, motion artifact analysis, and the simulation of novel ULM modalities, such as capillary imaging, myocardial reconstruction under beating heart motion, and simulating neurovascular evoked responses.

physics.med-ph↗

arXiv2024

WeHelp: A Shared Autonomy System for Wheelchair Users

There is a large population of wheelchair users. Most of the wheelchair users need help with daily tasks. However, according to recent reports, their needs are not properly satisfied due to the lack of caregivers. Therefore, in this project, we develop WeHelp, a shared autonomy system aimed for wheelchair users. A robot with a WeHelp system has three modes, following mode, remote control mode and tele-operation mode. In the following mode, the robot follows the wheelchair user automatically via visual tracking. The wheelchair user can ask the robot to follow them from behind, by the left or by the right. When the wheelchair user asks for help, the robot will recognize the command via speech recognition, and then switch to the teleoperation mode or remote control mode. In the teleoperation mode, the wheelchair user takes over the robot with a joy stick and controls the robot to complete some complex tasks for their needs, such as opening doors, moving obstacles on the way, reaching objects on a high shelf or on the low ground, etc. In the remote control mode, a remote assistant takes over the robot and helps the wheelchair user complete some complex tasks for their needs. Our evaluation shows that the pipeline is useful and practical for wheelchair users. Source code and demo of the paper are available at \url{https://github.com/Walleclipse/WeHelp}.

cs.RO↗

arXiv2024

Functional Assessment of Cerebral Capillaries using Single Capillary Reporters in Ultrasound Localization Microscopy

The brain's microvascular cerebral capillary network plays a vital role in maintaining neuronal health, yet capillary dynamics are still not well understood due to limitations in existing imaging techniques. Here, we present Single Capillary Reporters (SCaRe) for transcranial Ultrasound Localization Microscopy (ULM), a novel approach enabling non-invasive, whole-brain mapping of single capillaries and estimates of their transit-time as a neurovascular biomarker. We accomplish this first through computational Monte Carlo and ultrasound simulations of microbubbles flowing through a fully-connected capillary network. We unveil distinct capillary flow behaviors which informs methodological changes to ULM acquisitions to better capture capillaries in vivo. Subsequently, applying SCaRe-ULM in vivo, we achieve unprecedented visualization of single capillary tracks across brain regions, analysis of layer-specific capillary heterogeneous transit times (CHT), and characterization of whole microbubble trajectories from arterioles to venules. Lastly, we evaluate capillary biomarkers using injected lipopolysaccharide to induce systemic neuroinflammation and track the increase in SCaRe-ULM CHT, demonstrating the capability to detect subtle capillary functional changes. SCaRe-ULM represents a significant advance in studying microvascular dynamics, offering novel avenues for investigating capillary patterns in neurological disorders and potential diagnostic applications.

physics.med-ph↗

arXiv2024

3D transcranial Dynamic Ultrasound Localization Microscopy in the mouse brain using a Row-Column Array

The role of brain hemodynamics in neurodegenerative diseases cannot be fully assessed using existing imaging technologies. Recently, 2D Dynamic Ultrasound Localization Microscopy (DULM) has allowed for the quantitative mapping of the pulsatile flow at sub-wavelength resolution. However, to obtain accurate velocity estimates, 3D imaging is more adapted, especially for complex vascularized organs like the brain. 3D+t DULM is achievable using matrix array probes, but suffers from limitations in terms of cost, device complexity associated with the high channel count, and operating frequencies. Alternatively, Row Column Arrays (RCA) can reduce the number of elements while maintaining a large field of view and high frame rate. Herein, we demonstrate the feasibility of performing 3D+t blood flow measurements in the mouse brain using an RCA and a DULM sequence with a high spatiotemporal resolution. Transcranial images of anesthetized mice (n=7) were acquired at a volume rate of 750 Hz using 42 tilted plane waves. After microbubbles localization and tracking, super-resolved dynamic density and velocity maps of the 3D brain vascular network were obtained. Cortical vessels were segmented and pulsatility in the arteries was significantly higher than in veins for all mice, in accordance with the literature. Our results demonstrate the feasibility and reproducibility of achieving high spatiotemporal resolution volumes of the mouse brain vasculature with DULM using a RCA.

physics.med-ph↗

arXiv2023

A unified framework combining coherent compounding, harmonic imaging and angular coherence for simultaneous high-quality B-mode and tissue Doppler in ultrafast echocardiography

Various methods have been proposed to enhance image quality in ultrafast ultrasound. Coherent compounding can improve image quality using multiple steered diverging transmits when motion occurring between transmits is corrected for. Harmonic imaging, a standard technique in conventional focused echocardiography, has been adapted for ultrafast imaging, reducing clutter. Coherence-based approaches have also been shown to increase contrast in clinical settings by enhancing signals from coherent echoes and reducing clutter. Herein, we introduce a simple, unified framework that combines motion-correction, harmonic imaging, and angular-coherence, showing for the first time that their benefits can be combined in real-time. Validation was conducted through in vitro testing on a spinning disk model and in vivo on 4 volunteers. In vitro results confirmed the unified framework capability to achieve high contrast in large-motion contexts up to 17 cm/s. In vivo testing highlighted proficiency in generating images of high quality during low and high tissue velocity phases of the cardiac cycle. Specifically, during ventricular filling, the unified framework increased the gCNR from 0.47 to 0.87 when compared against coherent compounding.

physics.bio-ph↗

arXiv2023

Dynamic Imaging using any Ultrasound Localization Microscopy Dataset

Ultrasound Localization Microscopy (ULM) relies on the injection of microbubbles (MBs) to obtain highly resolved density maps of blood circulation in vivo, with a resolution that can reach 10 {\mu}m ~ {\lambda}/10 in the rodent brain. Static mean velocity maps can be extracted but are intrinsically biased by potential significant changes in the number of MBs detected during the cardiac cycle. Dynamic ULM (DULM) is a technique developed for non-invasive pulsatility measurements in the brain of rodents, leading to temporally resolved velocity and density cine-loops. It was previously based on external triggers such as the electrocardiogram (ECG), limiting its use to datasets acquired specifically for DULM applications while also increasing the required acquisition time. This study presents a new motion matching method using tissue Doppler that eliminates the need for ECG-gating in DULM experiments. DULM can now be performed on any ULM datasets, recovering pertinent temporal information, and improving the robustness of the mean velocity estimates.

physics.med-ph↗

arXiv2023

A Tracking prior to Localization workflow for Ultrasound Localization Microscopy

Ultrasound Localization Microscopy (ULM) has proven effective in resolving microvascular structures and local mean velocities at sub-diffraction-limited scales, offering high-resolution imaging capabilities. Dynamic ULM (DULM) enables the creation of angiography or velocity movies throughout cardiac cycles. Currently, these techniques rely on a Localization-and-Tracking (LAT) workflow consisting in detecting microbubbles (MB) in the frames before pairing them to generate tracks. While conventional LAT methods perform well at low concentrations, they suffer from longer acquisition times and degraded localization and tracking accuracy at higher concentrations, leading to biased angiogram reconstruction and velocity estimation. In this study, we propose a novel approach to address these challenges by reversing the current workflow. The proposed method, Tracking-and-Localization (TAL), relies on first tracking the MB and then performing localization. Through comprehensive benchmarking using both in silico and in vivo experiments and employing various metrics to quantify ULM angiography and velocity maps, we demonstrate that the TAL method consistently outperforms the reference LAT workflow. Moreover, when applied to DULM, TAL successfully extracts velocity variations along the cardiac cycle with improved repeatability. The findings of this work highlight the effectiveness of the TAL approach in overcoming the limitations of conventional LAT methods, providing enhanced ULM angiography and velocity imaging.

physics.med-ph↗

arXiv2023

Practice with Graph-based ANN Algorithms on Sparse Data: Chi-square Two-tower model, HNSW, Sign Cauchy Projections

Sparse data are common. The traditional ``handcrafted'' features are often sparse. Embedding vectors from trained models can also be very sparse, for example, embeddings trained via the ``ReLu'' activation function. In this paper, we report our exploration of efficient search in sparse data with graph-based ANN algorithms (e.g., HNSW, or SONG which is the GPU version of HNSW), which are popular in industrial practice, e.g., search and ads (advertising). We experiment with the proprietary ads targeting application, as well as benchmark public datasets. For ads targeting, we train embeddings with the standard ``cosine two-tower'' model and we also develop the ``chi-square two-tower'' model. Both models produce (highly) sparse embeddings when they are integrated with the ``ReLu'' activation function. In EBR (embedding-based retrieval) applications, after we the embeddings are trained, the next crucial task is the approximate near neighbor (ANN) search for serving. While there are many ANN algorithms we can choose from, in this study, we focus on the graph-based ANN algorithm (e.g., HNSW-type). Sparse embeddings should help improve the efficiency of EBR. One benefit is the reduced memory cost for the embeddings. The other obvious benefit is the reduced computational time for evaluating similarities, because, for graph-based ANN algorithms such as HNSW, computing similarities is often the dominating cost. In addition to the effort on leveraging data sparsity for storage and computation, we also integrate ``sign cauchy random projections'' (SignCRP) to hash vectors to bits, to further reduce the memory cost and speed up the ANN search. In NIPS'13, SignCRP was proposed to hash the chi-square similarity, which is a well-adopted nonlinear kernel in NLP and computer vision. Therefore, the chi-square two-tower model, SignCRP, and HNSW are now tightly integrated.

cs.IR↗