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Alkesh Yadav

Publications and source records attributed to Alkesh Yadav.

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Predictable Mean-Field Chaos in Random Recurrent Neural Networks

Dynamical mean-field theory (DMFT) maps deterministic chaos in random recurrent neural networks to an effective Gaussian process, usually treated as an ensemble description rather than a predictor of individual trajectories. Contrary to this view, we show that the chaotic mean-field process of the Sompolinsky--Crisanti--Sommers model can be perfectly predictable at the level of a single neuron. When the nonlinearity has a Gaussian or faster Fourier decay, the exact continuous past of one realization determines its entire future: the conditional prediction error vanishes despite a positive Lyapunov exponent. We trace this result to complex-time singularities of the self-consistent covariance through the Paley--Wiener criterion. A Lanczos/Krylov representation turns the covariance into a state-space predictor and defines $\alpha$, the rate at which predictive information is transferred to higher temporal modes. For smooth odd nonlinearities in this predictable class, the Krylov rate and the largest Lyapunov exponent scale differently near the chaotic transition, demonstrating that predictive complexity and microscopic instability are distinct characteristics of the dynamics. Resolving the first $p$ Krylov modes yields a prediction horizon that grows as $\log p$ and enables finite-network forecasts from a single neuron's observed past, without knowing the connectivity and without observing the rest of the network. Thus, the mean-field power spectrum becomes a diagnostic of whether apparent variability reflects irreducible fluctuations or hidden deterministic structure encoded in the observed past.

cond-mat.dis-nn

Glycan processing in the Golgi -- optimal information coding and constraints on cisternal number and enzyme specificity

Many proteins that undergo sequential enzymatic modification in the Golgi cisternae are displayed at the plasma membrane as cell identity markers. The modified proteins, called glycans, represent a molecular code. The fidelity of this glycan code is measured by how accurately the glycan synthesis machinery realises the desired target glycan distribution for a particular cell type and niche. In this paper, we quantitatively analyse the tradeoffs between the number of cisternae and the number and specificity of enzymes, in order to synthesize a prescribed target glycan distribution of a certain complexity. We find that to synthesize complex distributions, such as those observed in real cells, one needs to have multiple cisternae and precise enzyme partitioning in the Golgi. Additionally, for fixed number of enzymes and cisternae, there is an optimal level of specificity of enzymes that achieves the target distribution with high fidelity. Our results show how the complexity of the target glycan distribution places functional constraints on the Golgi cisternal number and enzyme specificity.

q-bio.SC