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Allan A. Zea

Publications and source records attributed to Allan A. Zea.

3 recordsLinked to original sources

Minimal Algorithmic Information Loss Methods for Dimension Reduction, Feature Selection and Network Sparsification

We present a novel, domain-agnostic, model-independent, unsupervised, and universally applicable Machine Learning approach for dimensionality reduction based on the principles of algorithmic complexity. Specifically, but without loss of generality, we focus on addressing the challenge of reducing certain dimensionality aspects, such as the number of edges in a network, while retaining essential features of interest. These features include preserving crucial network properties like degree distribution, clustering coefficient, edge betweenness, and degree and eigenvector centralities but can also go beyond edges to nodes and weights for network pruning and trimming. Our approach outperforms classical statistical Machine Learning techniques and state-of-the-art dimensionality reduction algorithms by preserving a greater number of data features that statistical algorithms would miss, particularly nonlinear patterns stemming from deterministic recursive processes that may look statistically random but are not. Moreover, previous approaches heavily rely on a priori feature selection, which requires constant supervision. Our findings demonstrate the effectiveness of the algorithms in overcoming some of these limitations while maintaining a time-efficient computational profile. Our approach not only matches, but also exceeds, the performance of established and state-of-the-art dimensionality reduction algorithms. We extend the applicability of our method to lossy compression tasks involving images and any multi-dimensional data. This highlights the versatility and broad utility of the approach in multiple domains.

cs.DS

Algorithmic Causal Deconvolution of Intertwined Programs and Networks by Generative Mechanism

Complex data usually results from the interaction of objects produced by different generating mechanisms. Here we introduce a universal, unsupervised and parameter-free model-oriented approach, based upon the seminal concept of algorithmic probability, that decomposes an observation into its most likely algorithmic generative sources. Our approach uses a causal calculus to infer model representations. We demonstrate its ability to deconvolve interacting mechanisms regardless of whether the resultant objects are strings, space-time evolution diagrams, images or networks. While this is mostly a conceptual contribution and a novel framework, we provide numerical evidence evaluating the ability of our methods to separate data from observations produced by discrete dynamical systems such as cellular automata and complex networks. We think that these separating techniques can contribute to tackling the challenge of causation, thus complementing other statistically oriented approaches.

cs.AI

Characterizing the structure of protein-protein interaction networks

Network theorists have developed methods to characterize the complex interactions in natural phenomena. The structure of the network of interactions between proteins is important in the field of proteomics, and has been subject to intensive research in recent years, as scientists have become increasingly capable and interested in describing the underlying structure of interactions in both normal and pathological biological processes. In this paper, we survey the graph-theoretic characterization of protein-protein interaction networks (PINs) in terms of structural features, and discuss its possible applications in biomedical research. We also perform a brief revision of network theory's classical literature and discuss modern statistical and computational techniques to describe the structure of PINs

q-bio.MN