arXiv subjects

Amel Shamseldeen Ali Alhassan

Publications and source records attributed to Amel Shamseldeen Ali Alhassan.

3 recordsLinked to original sources

arXiv2026

Ptychographic Algorithms for Phase Recovery in 4D Scanning Transmission Electron Microscopy

In Momentum-resolved Scanning Transmission Electron Microscopy (4D STEM), a convergent electron beam is raster-scanned across a think specimen in 2D in real space. The corresponding 2D diffraction pattern, in momentum space, to each point is recorded, forming a 4D data set. Information decoding process can follow thereafter to produce an image of the specimen in real space. Ptychography is reconstruction algorithm that allow the extraction of the probe wavefunction and the multiplicative object transmission function of the specimen. Ptychography is implemented through direct and iterative schemes. Some of which are the extended Ptychographic Iterative Engine (ePIE), the Wigner Distribution Deconvolution (WDD) and the simpler version of WDD, the Single Side-Band (SSB). This thesis gives an overview of STEM ptychography giving examples of its experimental and simulated implementations. The different ptychographic reconstruction methods are explored in a mathematical framework when applicable. Finally, an SSB reconstruction was made using an original script for simulated data of MoS2 monolayer. Moreover, four-dimensional data was recorded using a STEM instrument. A natural step following this research would be the implementation of the WDD algorithm.

cond-mat.mtrl-sci↗

arXiv2023

Constructing phase diagrams for defects by correlated atomic-scale characterization

Phase transformations and crystallographic defects are two essential tools to drive innovations in materials. Bulk materials design via tuning chemical compositions has been systematized using phase diagrams. We show here that the same thermodynamic concept can be applied to understand the chemistry at defects. We present a combined experimental and modelling approach to scope and build phase diagrams for defects. The discovery was enabled by triggering phase transformations of individual defects through local alloying, and sequentially imaging the structural and chemical changes using atomic-resolution scanning transmission electron microscopy. By observing atomic-scale phase transformations of a Mg grain boundary through Ga alloying, we exemplified the method to construct a grain boundary phase diagram using ab initio simulations and thermodynamic principles. The methodology enables a systematic development of defect phase diagrams to propel a new paradigm for materials design utilizing chemical complexity and phase transformations at defects.

cond-mat.mtrl-sci↗

arXiv2023

Direct Motif Extraction from High Resolution Crystalline STEM Images

During the last decade, automatic data analysis methods concerning different aspects of crystal analysis have been developed, e.g., unsupervised primitive unit cell extraction and automated crystal distortion and defects detection. However, an automatic, unsupervised motif extraction method is still not widely available yet. Here, we propose and demonstrate a novel method for the automatic motif extraction in real space from crystalline images based on a variational approach involving the unit cell projection operator. Due to the non-convex nature of the resulting minimization problem, a multi-stage algorithm is used. First, we determine the primitive unit cell in form of two lattice vectors. Second, a motif image is estimated using the unit cell information. Finally, the motif is determined in terms of atom positions inside the unit cell. The method was tested on various synthetic and experimental HAADF STEM images. The results are a representation of the motif in form of an image, atomic positions, primitive unit cell vectors, and a denoised and a modeled reconstruction of the input image. The method was applied to extract the primitive cells of complex $μ$-phase structures Nb$_\text{6.4}$Co$_\text{6.6}$ and Nb$_\text{7}$Co$_\text{6}$, where subtle differences between their interplanar spacings were determined.

eess.IV↗