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Amir K. Goharshady

Publications and source records attributed to Amir K. Goharshady.

2 recordsLinked to original sources

Parameterized Algorithms and Complexity for Function Merging with Branch Reordering

Binary size reduction is an increasingly important optimization objective for compilers. One emerging technique is function merging, where multiple similar functions are merged into one, thereby eliminating redundancy. The SOTA approach to perform the merging is based on sequence alignment, where functions are viewed as linear sequences of instructions that are then matched in a way maximizing their alignment. In this paper, we consider a significantly generalized formulation of the problem by allowing reordering of branches within each function, subsequently allowing for more flexible matching and better merging. We show that this makes the problem NP-hard, and thus we study it through the lens of parameterized algorithms and complexity, where we identify certain parameters of the input that govern its complexity. We look at two natural parameters: the branching factor and nesting depth of input functions. Concretely, our input consists of two functions $F_1, F_2,$ where each $F_i$ has size $n_i,$ branching factor $b_i,$ and nesting depth $d_i.$ Our task is to reorder the branches of $F_1$ and $F_2$ in a way that yields linearizations achieving the maximum sequence alignment. Let $n=\max(n_1, n_2),$ and define $b, d$ similarly. Our results are as follows: - A simple algorithm running in time $2^{O(bd)} n^2,$ establishing that the problem is fixed-parameter tractable (FPT) with respect to all four parameters $b_1,d_1, b_2, d_2.$ - An algorithm running in time $2^{O(bd_2)} n^7,$ showing that even when one of the functions has an unbounded nesting depth, the problem remains in FPT. - A hardness result showing that the problem is NP-hard even when constrained to constant $d_1, b_2, d_2.$ To the best of our knowledge, this is the first systematic study of function merging with branch reordering from an algorithmic or complexity-theoretic perspective.

cs.PL↗

Combinatorial Parameterized Algorithms for Chemical Descriptors based on Molecular Graph Sparsity

We present efficient combinatorial parameterized algorithms for several classical graph-based counting problems in computational chemistry, including (i) Kekule structures, (ii) the Hosoya index, (iii) the Merrifield-Simmons index, and (iv) Graph entropy based on matchings and independent sets. All these problems were known to be #P-complete. Building on the intuition that molecular graphs are often sparse and tree-like, we provide fixed-parameter tractable (FPT) algorithms using treewidth as our parameter. We also provide extensive experimental results over the entire PubChem database of chemical compounds, containing more than 113 million real-world molecules. In our experiments, we observe that the molecules are indeed sparse and tree-like, with more than 99.9% of them having a treewidth of at most 5. This justifies our choice of parameter. Our experiments also illustrate considerable improvements over the previous approaches. Based on these results, we argue that parameterized algorithms, especially based on treewidth, should be adopted as the default approach for problems in computational chemistry that are defined over molecular graphs.

cs.DS↗