arXiv subjects

Amir Mohammad Karimi Mamaghan

Publications and source records attributed to Amir Mohammad Karimi Mamaghan.

6 recordsLinked to original sources

arXiv2026

Growing to See: Efficient Pretraining of Self-Supervised Vision Transformers

Progressive depth growth builds large networks by starting with shallow models and inserting layers during training. Recent advances in large language models have renewed interest in this longstanding approach, demonstrating benefits for training efficiency and reasoning alongside changes in internal computations. However, how growing affects representation quality and computational patterns in self-supervised vision transformers remains unclear. In this work, we systematically investigate progressive depth growth in two popular self-supervised families, namely masked autoencoders (MAE) and DINOv3, and analyze how growing affects downstream performance, intermediate representations, and internal computations. Across global and dense tasks, we show that growing improves downstream performance while reducing training FLOPs by 13.9--24.8%, with ImageNet linear-probe accuracy gains of up to 3.36 percentage points. Growing also improves downstream performance at intermediate layers and reshapes internal computational patterns, introducing recurring alternations between global and localized attention in MAE and earlier local-to-global attention progression in self-distilled DINOv3. Together, these findings establish progressive depth growth as an effective and efficient pretraining strategy for improving downstream performance across global and dense visual tasks with less computation, and advance our understanding of how growing shapes visual computation.

cs.CV↗

arXiv2026

From Words to Amino Acids: Does the Curse of Depth Persist?

Protein language models (PLMs) have become widely adopted as general-purpose models, demonstrating strong performance in protein engineering and de novo design. Like large language models (LLMs), they are typically trained as deep transformers with next-token or masked-token prediction objectives on massive sequence corpora and are scaled by increasing model depth. Recent work on autoregressive LLMs has identified the Curse of Depth: many later layers contribute little to the final output predictions. These findings naturally raise the question of whether a similar depth inefficiency also appears in PLMs, where many widely used models are not autoregressive, and some are multimodal, accepting both protein sequence and structure as input. In this work, we present a depth analysis of seven popular PLM families across model scales, spanning autoregressive, masked, and diffusion objectives, and quantify how layer contributions evolve with depth using a unified set of probing-, perturbation-, and downstream-evaluation measurements. Across models, we observe consistent depth-dependent patterns that extend prior findings on LLMs: a large fraction of task-relevant computation is concentrated in a subset of layers, while the remaining layers mainly provide incremental refinement of the final prediction. These trends persist beyond sequence-only settings and also appear in multimodal PLMs. Taken together, our results suggest that depth inefficiency is a common feature of modern PLMs, motivating future work on more depth-efficient architectures and training methods.

cs.LG↗

arXiv2026

Are Object-Centric Representations Better At Compositional Generalization?

Compositional generalization, the ability to reason about novel combinations of familiar concepts, is fundamental to human cognition and a critical challenge for machine learning. Object-centric (OC) representations, which encode a scene as a set of objects, are often argued to support such generalization, but systematic evidence in visually rich settings is limited. We introduce a Visual Question Answering benchmark across three controlled visual worlds (CLEVRTex, Super-CLEVR, and MOVi-C) to measure how well vision encoders, with and without object-centric biases, generalize to unseen combinations of object properties. To ensure a fair and comprehensive comparison, we carefully account for training data diversity, sample size, representation size, downstream model capacity, and compute. We use DINOv2 and SigLIP2, two widely used vision encoders, as the foundation models and their OC counterparts. Our key findings reveal that (1) OC approaches are superior in harder compositional generalization settings; (2) original dense representations surpass OC only on easier settings and typically require substantially more downstream compute; and (3) OC models are more sample efficient, achieving stronger generalization with fewer images, whereas dense encoders catch up or surpass them only with sufficient data and diversity. Overall, object-centric representations offer stronger compositional generalization when any one of dataset size, training data diversity, or downstream compute is constrained.

cs.CV↗

arXiv2025

Exploring the Effectiveness of Object-Centric Representations in Visual Question Answering: Comparative Insights with Foundation Models

Object-centric (OC) representations, which model visual scenes as compositions of discrete objects, have the potential to be used in various downstream tasks to achieve systematic compositional generalization and facilitate reasoning. However, these claims have yet to be thoroughly validated empirically. Recently, foundation models have demonstrated unparalleled capabilities across diverse domains, from language to computer vision, positioning them as a potential cornerstone of future research for a wide range of computational tasks. In this paper, we conduct an extensive empirical study on representation learning for downstream Visual Question Answering (VQA), which requires an accurate compositional understanding of the scene. We thoroughly investigate the benefits and trade-offs of OC models and alternative approaches including large pre-trained foundation models on both synthetic and real-world data, ultimately identifying a promising path to leverage the strengths of both paradigms. The extensiveness of our study, encompassing over 600 downstream VQA models and 15 different types of upstream representations, also provides several additional insights that we believe will be of interest to the community at large.

cs.CV↗

arXiv2024

Challenges and Considerations in the Evaluation of Bayesian Causal Discovery

Representing uncertainty in causal discovery is a crucial component for experimental design, and more broadly, for safe and reliable causal decision making. Bayesian Causal Discovery (BCD) offers a principled approach to encapsulating this uncertainty. Unlike non-Bayesian causal discovery, which relies on a single estimated causal graph and model parameters for assessment, evaluating BCD presents challenges due to the nature of its inferred quantity - the posterior distribution. As a result, the research community has proposed various metrics to assess the quality of the approximate posterior. However, there is, to date, no consensus on the most suitable metric(s) for evaluation. In this work, we reexamine this question by dissecting various metrics and understanding their limitations. Through extensive empirical evaluation, we find that many existing metrics fail to exhibit a strong correlation with the quality of approximation to the true posterior, especially in scenarios with low sample sizes where BCD is most desirable. We highlight the suitability (or lack thereof) of these metrics under two distinct factors: the identifiability of the underlying causal model and the quantity of available data. Both factors affect the entropy of the true posterior, indicating that the current metrics are less fitting in settings of higher entropy. Our findings underline the importance of a more nuanced evaluation of new methods by taking into account the nature of the true posterior, as well as guide and motivate the development of new evaluation procedures for this challenge.

cs.LG↗

arXiv2023

Diffusion Based Causal Representation Learning

Causal reasoning can be considered a cornerstone of intelligent systems. Having access to an underlying causal graph comes with the promise of cause-effect estimation and the identification of efficient and safe interventions. However, learning causal representations remains a major challenge, due to the complexity of many real-world systems. Previous works on causal representation learning have mostly focused on Variational Auto-Encoders (VAE). These methods only provide representations from a point estimate, and they are unsuitable to handle high dimensions. To overcome these problems, we proposed a new Diffusion-based Causal Representation Learning (DCRL) algorithm. This algorithm uses diffusion-based representations for causal discovery. DCRL offers access to infinite dimensional latent codes, which encode different levels of information in the latent code. In a first proof of principle, we investigate the use of DCRL for causal representation learning. We further demonstrate experimentally that this approach performs comparably well in identifying the causal structure and causal variables.

cs.LG↗