arXiv subjects

Amirhossein Kazerouni

Publications and source records attributed to Amirhossein Kazerouni.

24 records · Page 2Linked to original sources

arXiv2023

Implicit Neural Representation in Medical Imaging: A Comparative Survey

Implicit neural representations (INRs) have gained prominence as a powerful paradigm in scene reconstruction and computer graphics, demonstrating remarkable results. By utilizing neural networks to parameterize data through implicit continuous functions, INRs offer several benefits. Recognizing the potential of INRs beyond these domains, this survey aims to provide a comprehensive overview of INR models in the field of medical imaging. In medical settings, numerous challenging and ill-posed problems exist, making INRs an attractive solution. The survey explores the application of INRs in various medical imaging tasks, such as image reconstruction, segmentation, registration, novel view synthesis, and compression. It discusses the advantages and limitations of INRs, highlighting their resolution-agnostic nature, memory efficiency, ability to avoid locality biases, and differentiability, enabling adaptation to different tasks. Furthermore, the survey addresses the challenges and considerations specific to medical imaging data, such as data availability, computational complexity, and dynamic clinical scene analysis. It also identifies future research directions and opportunities, including integration with multi-modal imaging, real-time and interactive systems, and domain adaptation for clinical decision support. To facilitate further exploration and implementation of INRs in medical image analysis, we have provided a compilation of cited studies along with their available open-source implementations on \href{https://github.com/mindflow-institue/Awesome-Implicit-Neural-Representations-in-Medical-imaging}. Finally, we aim to consistently incorporate the most recent and relevant papers regularly.

eess.IV↗

arXiv2023

DAE-Former: Dual Attention-guided Efficient Transformer for Medical Image Segmentation

Transformers have recently gained attention in the computer vision domain due to their ability to model long-range dependencies. However, the self-attention mechanism, which is the core part of the Transformer model, usually suffers from quadratic computational complexity with respect to the number of tokens. Many architectures attempt to reduce model complexity by limiting the self-attention mechanism to local regions or by redesigning the tokenization process. In this paper, we propose DAE-Former, a novel method that seeks to provide an alternative perspective by efficiently designing the self-attention mechanism. More specifically, we reformulate the self-attention mechanism to capture both spatial and channel relations across the whole feature dimension while staying computationally efficient. Furthermore, we redesign the skip connection path by including the cross-attention module to ensure the feature reusability and enhance the localization power. Our method outperforms state-of-the-art methods on multi-organ cardiac and skin lesion segmentation datasets without requiring pre-training weights. The code is publicly available at https://github.com/mindflow-institue/DAEFormer.

cs.CV↗

arXiv2023

Diffusion Models for Medical Image Analysis: A Comprehensive Survey

Denoising diffusion models, a class of generative models, have garnered immense interest lately in various deep-learning problems. A diffusion probabilistic model defines a forward diffusion stage where the input data is gradually perturbed over several steps by adding Gaussian noise and then learns to reverse the diffusion process to retrieve the desired noise-free data from noisy data samples. Diffusion models are widely appreciated for their strong mode coverage and quality of the generated samples despite their known computational burdens. Capitalizing on the advances in computer vision, the field of medical imaging has also observed a growing interest in diffusion models. To help the researcher navigate this profusion, this survey intends to provide a comprehensive overview of diffusion models in the discipline of medical image analysis. Specifically, we introduce the solid theoretical foundation and fundamental concepts behind diffusion models and the three generic diffusion modelling frameworks: diffusion probabilistic models, noise-conditioned score networks, and stochastic differential equations. Then, we provide a systematic taxonomy of diffusion models in the medical domain and propose a multi-perspective categorization based on their application, imaging modality, organ of interest, and algorithms. To this end, we cover extensive applications of diffusion models in the medical domain. Furthermore, we emphasize the practical use case of some selected approaches, and then we discuss the limitations of the diffusion models in the medical domain and propose several directions to fulfill the demands of this field. Finally, we gather the overviewed studies with their available open-source implementations at https://github.com/amirhossein-kz/Awesome-Diffusion-Models-in-Medical-Imaging.

eess.IV↗

arXiv2023

An intelligent modular real-time vision-based system for environment perception

A significant portion of driving hazards is caused by human error and disregard for local driving regulations; Consequently, an intelligent assistance system can be beneficial. This paper proposes a novel vision-based modular package to ensure drivers' safety by perceiving the environment. Each module is designed based on accuracy and inference time to deliver real-time performance. As a result, the proposed system can be implemented on a wide range of vehicles with minimum hardware requirements. Our modular package comprises four main sections: lane detection, object detection, segmentation, and monocular depth estimation. Each section is accompanied by novel techniques to improve the accuracy of others along with the entire system. Furthermore, a GUI is developed to display perceived information to the driver. In addition to using public datasets, like BDD100K, we have also collected and annotated a local dataset that we utilize to fine-tune and evaluate our system. We show that the accuracy of our system is above 80% in all the sections. Our code and data are available at https://github.com/Pandas-Team/Autonomous-Vehicle-Environment-Perception

cs.CV↗

arXiv2023

HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation

Convolutional neural networks (CNNs) have been the consensus for medical image segmentation tasks. However, they suffer from the limitation in modeling long-range dependencies and spatial correlations due to the nature of convolution operation. Although transformers were first developed to address this issue, they fail to capture low-level features. In contrast, it is demonstrated that both local and global features are crucial for dense prediction, such as segmenting in challenging contexts. In this paper, we propose HiFormer, a novel method that efficiently bridges a CNN and a transformer for medical image segmentation. Specifically, we design two multi-scale feature representations using the seminal Swin Transformer module and a CNN-based encoder. To secure a fine fusion of global and local features obtained from the two aforementioned representations, we propose a Double-Level Fusion (DLF) module in the skip connection of the encoder-decoder structure. Extensive experiments on various medical image segmentation datasets demonstrate the effectiveness of HiFormer over other CNN-based, transformer-based, and hybrid methods in terms of computational complexity, and quantitative and qualitative results. Our code is publicly available at: https://github.com/amirhossein-kz/HiFormer

cs.CV↗

arXiv2022

Ensemble Neural Representation Networks

Implicit Neural Representation (INR) has recently attracted considerable attention for storing various types of signals in continuous forms. The existing INR networks require lengthy training processes and high-performance computational resources. In this paper, we propose a novel sub-optimal ensemble architecture for INR that resolves the aforementioned problems. In this architecture, the representation task is divided into several sub-tasks done by independent sub-networks. We show that the performance of the proposed ensemble INR architecture may decrease if the dimensions of sub-networks increase. Hence, it is vital to suggest an optimization algorithm to find the sub-optimal structure of the ensemble network, which is done in this paper. According to the simulation results, the proposed architecture not only has significantly fewer floating-point operations (FLOPs) and less training time, but it also has better performance in terms of Peak Signal to Noise Ratio (PSNR) compared to those of its counterparts.

cs.LG↗