Searcharxiv⌕ Search

arXiv subjects

Amirhossein Toosi

Publications and source records attributed to Amirhossein Toosi.

2 recordsLinked to original sources

Adaptive Voxel-Weighted Loss Using L1 Norms in Deep Neural Networks for Detection and Segmentation of Prostate Cancer Lesions in PET/CT Images

Accurate automated detection of recurrent prostate cancer in PSMA PET/CT scans is challenging due to heterogeneous lesion size, activity, anatomical location, and intra- and inter-class imbalances. Conventional deep learning loss functions often produce suboptimal optimization, as gradients are dominated by easy background voxels or extreme outliers. To address this, we propose L1-weighted Dice Focal Loss (L1DFL), which harmonizes gradient magnitudes across voxels using L1 norms to adaptively weight samples based on classification difficulty, resulting in well-calibrated predictions with a bimodal separation between correct and incorrect predictions. We trained three 3D convolutional networks (Attention U-Net, SegResNet, U-Net) and a transformer-based UNETR model on 380 PSMA PET/CT scans. PET and CT volumes were concatenated as input to the models. We also fine-tuned SAM-Med3D foundation model with the different loss functions and evaluated their performance. Across architectures, L1DFL consistently outperformed Dice Loss (DL) and Dice Focal Loss (DFL), achieving at least a 4% improvement in Dice Similarity Coefficient. F1 scores were higher by 6% and 26% compared to DL and DFL, respectively. While DFL produced more false positives and DL struggled with larger lesions, L1DFL achieved balanced detection, minimizing false detections while maintaining high true positive rates. The gradient harmonization mechanism ensured robustness across varying lesion sizes, volumes, and spread. The code is publicly available at: https://github.com/ObedDzik/pca_segment.git.

eess.IV↗

Comprehensive Evaluation of Quantitative Measurements from Automated Deep Segmentations of PSMA PET/CT Images

This study performs a comprehensive evaluation of quantitative measurements as extracted from automated deep-learning-based segmentation methods, beyond traditional Dice Similarity Coefficient assessments, focusing on six quantitative metrics, namely SUVmax, SUVmean, total lesion activity (TLA), tumor volume (TMTV), lesion count, and lesion spread. We analyzed 380 prostate-specific membrane antigen (PSMA) targeted [18F]DCFPyL PET/CT scans of patients with biochemical recurrence of prostate cancer, training deep neural networks, U-Net, Attention U-Net and SegResNet with four loss functions: Dice Loss, Dice Cross Entropy, Dice Focal Loss, and our proposed L1 weighted Dice Focal Loss (L1DFL). Evaluations indicated that Attention U-Net paired with L1DFL achieved the strongest correlation with the ground truth (concordance correlation = 0.90-0.99 for SUVmax and TLA), whereas models employing the Dice Loss and the other two compound losses, particularly with SegResNet, underperformed. Equivalence testing (TOST, alpha = 0.05, Delta = 20%) confirmed high performance for SUV metrics, lesion count and TLA, with L1DFL yielding the best performance. By contrast, tumor volume and lesion spread exhibited greater variability. Bland-Altman, Coverage Probability, and Total Deviation Index analyses further highlighted that our proposed L1DFL minimizes variability in quantification of the ground truth clinical measures. The code is publicly available at: https://github.com/ObedDzik/pca\_segment.git.

eess.IV↗