arXiv subjects

Amit Kumar

Publications and source records attributed to Amit Kumar.

At least 217 records · Page 12Linked to original sources

arXiv2020

Impact of crowders on the morphology of bacterial chromosomes

Inspired by recent experiments on the effects of cytosolic crowders on the organization of bacterial chromosomes, we consider a "feather-boa" type model chromosome in the presence of non-additive crowders, encapsulated within a cylindrical cell. We observe spontaneous emergence of complementary helicity of the confined polymer and crowders. This feature is reproduced within a simplified effective model of the chromosome. This latter model further establishes the occurrence of longitudinal and transverse spatial segregation transitions between the chromosome and crowders upon increasing crowder size.

physics.bio-ph↗

arXiv2020

Advaita: Bug Duplicity Detection System

Bugs are prevalent in software development. To improve software quality, bugs are filed using a bug tracking system. Properties of a reported bug would consist of a headline, description, project, product, component that is affected by the bug and the severity of the bug. Duplicate bugs rate (% of duplicate bugs) are in the range from single digit (1 to 9%) to double digits (40%) based on the product maturity , size of the code and number of engineers working on the project. Duplicate bugs range are between 9% to 39% in some of the open source projects like Eclipse, Firefox etc. Detection of duplicity deals with identifying whether any two bugs convey the same meaning. This detection of duplicates helps in de-duplication. Detecting duplicate bugs help reduce triaging efforts and saves time for developers in fixing the issues. Traditional natural language processing techniques are less accurate in identifying similarity between sentences. Using the bug data present in a bug tracking system, various approaches were explored including several machine learning algorithms, to obtain a viable approach that can identify duplicate bugs, given a pair of sentences(i.e. the respective bug descriptions). This approach considers multiple sets of features viz. basic text statistical features, semantic features and contextual features. These features are extracted from the headline, description and component and are subsequently used to train a classification algorithm.

cs.SE↗

arXiv2019

Multiplicative Rank-1 Approximation using Length-Squared Sampling

We show that the span of $Ω(\frac{1}{\varepsilon^4})$ rows of any matrix $A \subset \mathbb{R}^{n \times d}$ sampled according to the length-squared distribution contains a rank-$1$ matrix $\tilde{A}$ such that $||A - \tilde{A}||_F^2 \leq (1 + \varepsilon) \cdot ||A - π_1(A)||_F^2$, where $π_1(A)$ denotes the best rank-$1$ approximation of $A$ under the Frobenius norm. Length-squared sampling has previously been used in the context of rank-$k$ approximation. However, the approximation obtained was additive in nature. We obtain a multiplicative approximation albeit only for rank-$1$ approximation.

cs.DS↗

arXiv2019

Streaming PTAS for Binary $\ell_0$-Low Rank Approximation

We give a 3-pass, polylog-space streaming PTAS for the constrained binary $k$-means problem and a 4-pass, polylog-space streaming PTAS for the binary $\ell_0$-low rank approximation problem. The connection between the above two problems has recently been studied. We design a streaming PTAS for the former and use this connection to obtain streaming PTAS for the latter. This is the first constant pass, polylog-space streaming algorithm for either of the two problems.

cs.DS↗

arXiv2019

A Dual-Path Model With Adaptive Attention For Vehicle Re-Identification

In recent years, attention models have been extensively used for person and vehicle re-identification. Most re-identification methods are designed to focus attention on key-point locations. However, depending on the orientation, the contribution of each key-point varies. In this paper, we present a novel dual-path adaptive attention model for vehicle re-identification (AAVER). The global appearance path captures macroscopic vehicle features while the orientation conditioned part appearance path learns to capture localized discriminative features by focusing attention on the most informative key-points. Through extensive experimentation, we show that the proposed AAVER method is able to accurately re-identify vehicles in unconstrained scenarios, yielding state of the art results on the challenging dataset VeRi-776. As a byproduct, the proposed system is also able to accurately predict vehicle key-points and shows an improvement of more than 7% over state of the art. The code for key-point estimation model is available at https://github.com/Pirazh/Vehicle_Key_Point_Orientation_Estimation.

cs.CV↗

arXiv2019

The energy and scale dependence of $\hat{q}$ and the JET puzzle

We present an attempt to probe the underlying structure of the quark-gluon plasma (QGP) at high resolution, based on the extracted jet transport coefficient $\hat{q}$. We argue that the exchanged momentum $k$ between the hard parton and the medium varies over a range of scales, and for $k\geq$ 1 GeV, $\hat{q}$ can be expressed in terms of a parton distribution function (PDF). Because the mass of a QGP constituent is unknown, we define a scaling variable $x_N$ to represent the ratio of the parton momentum to the momentum of a self-contained section of the plasma which has a mass of 1 GeV. This scaling variable is used to parametrize the QGP-PDF. Calculations, based on this reconstructed $\hat{q}$ are compared to data sensitive to the hardcore of jets $i.e.,$ the single hadron suppression in terms of the nuclear modification factor $R_{AA}$ and the azimuthal anisotropy parameter $v_{2}$, as a function of transverse momentum $p_{\mathrm{T}}$, centrality and energy of the collision. It is demonstrated that the scale evolution of the QGP-PDF is responsible for the reduction in the normalization of $\hat{q}$ between fits to Relativistic Heavy-Ion Collider (RHIC) and Large Hadron Collider (LHC) data; a puzzle, first discovered by the JET collaboration.

nucl-th↗

arXiv2019

Landmark Detection in Low Resolution Faces with Semi-Supervised Learning

Landmark detection algorithms trained on high resolution images perform poorly on datasets containing low resolution images. This deters the performance of algorithms relying on quality landmarks, for example, face recognition. To the best of our knowledge, there does not exist any dataset consisting of low resolution face images along with their annotated landmarks, making supervised training infeasible. In this paper, we present a semi-supervised approach to predict landmarks on low resolution images by learning them from labeled high resolution images. The objective of this work is to show that predicting landmarks directly on low resolution images is more effective than the current practice of aligning images after rescaling or superresolution. In a two-step process, the proposed approach first learns to generate low resolution images by modeling the distribution of target low resolution images. In the second stage, the roles of generated images and real low resolution images are switched and the model learns to predict landmarks for real low resolution images from generated low resolution images. With extensive experimentation, we study the impact of each of the design choices and also show that prediction of landmarks directly on low resolution images improves the performance of important tasks such as face recognition in low resolution images.

cs.CV↗

arXiv2019

Cross-linker mediated compaction and local morphologies in a model chromosome

Chromatin and associated proteins constitute the highly folded structure of chromosomes. We consider a self-avoiding polymer model of the chromatin, segments of which may get cross-linked via protein binders that repel each other. The binders cluster together via the polymer mediated attraction, in turn, folding the polymer. Using molecular dynamics simulations, and a mean field description, we explicitly demonstrate the continuous nature of the folding transition, characterized by unimodal distributions of the polymer size across the transition. At the transition point the chromatin size and cross-linker clusters display large fluctuations, and a maximum in their negative cross-correlation, apart from a critical slowing down. Along the transition, we distinguish the local chain morphologies in terms of topological loops, inter-loop gaps, and zippering. The topologies are dominated by simply connected loops at the criticality, and by zippering in the folded phase.

cond-mat.soft↗

arXiv2019

Non-clairvoyant Precedence Constrained Scheduling

We consider the online problem of scheduling jobs on identical machines, where jobs have precedence constraints. We are interested in the demanding setting where the jobs sizes are not known up-front, but are revealed only upon completion (the non-clairvoyant setting). Such precedence-constrained scheduling problems routinely arise in map-reduce and large-scale optimization. In this paper, we make progress on this problem. For the objective of total weighted completion time, we give a constant-competitive algorithm. And for total weighted flow-time, we give an $O(1/ε^2)$-competitive algorithm under $(1+ε)$-speed augmentation and a natural ``no-surprises'' assumption on release dates of jobs (which we show is necessary in this context). Our algorithm proceeds by assigning {\em virtual rates} to all the waiting jobs, including the ones which are dependent on other uncompleted jobs, and then use these virtual rates to decide on the actual rates of minimal jobs (i.e., jobs which do not have dependencies and hence are eligible to run). Interestingly, the virtual rates are obtained by allocating time in a fair manner, using a Eisenberg-Gale-type convex program (which we can also solve optimally using a primal-dual scheme). The optimality condition of this convex program allows us to show dual-fitting proofs more easily, without having to guess and hand-craft the duals. We feel that this idea of using fair virtual rates should have broader applicability in scheduling problems.

cs.DS↗

arXiv2019

Tight FPT Approximations for $k$-Median and $k$-Means

We investigate the fine-grained complexity of approximating the classical $k$-median / $k$-means clustering problems in general metric spaces. We show how to improve the approximation factors to $(1+2/e+\varepsilon)$ and $(1+8/e+\varepsilon)$ respectively, using algorithms that run in fixed-parameter time. Moreover, we show that we cannot do better in FPT time, modulo recent complexity-theoretic conjectures.

cs.DS↗

arXiv2019

Reoptimization of Path Vertex Cover Problem

Most optimization problems are notoriously hard. Considerable efforts must be spent in obtaining an optimal solution to certain instances that we encounter in the real world scenarios. Often it turns out that input instances get modified locally in some small ways due to changes in the application world. The natural question here is, given an optimal solution for an old instance $I_O$, can we construct an optimal solution for the new instance $I_N$, where $I_N$ is the instance $I_O$ with some local modifications. Reoptimization of NP-hard optimization problem precisely addresses this concern. It turns out that for some reoptimization versions of the NP-hard problems, we may only hope to obtain an approximate solution to a new instance. In this paper, we specifically address the reoptimization of path vertex cover problem. The objective in $k$-$path$ vertex cover problem is to compute a minimum subset $S$ of the vertices in a graph $G$ such that after removal of $S$ from $G$ there is no path with $k$ vertices in the graph. We show that when a constant number of vertices are inserted, reoptimizing unweighted $k$-$path$ vertex cover problem admits a PTAS. For weighted $3$-$path$ vertex cover problem, we show that when a constant number of vertices are inserted, the reoptimization algorithm achieves an approximation factor of $1.5$, hence an improvement from known $2$-approximation algorithm for the optimization version. We provide reoptimization algorithm for weighted $k$-$path$ vertex cover problem $(k \geq 4)$ on bounded degree graphs, which is also an NP-hard problem. Given a $ρ$-approximation algorithm for $k$-$path$ vertex cover problem on bounded degree graphs, we show that it can be reoptimized within an approximation factor of $(2-\frac{1}ρ)$ under constant number of vertex insertions.

cs.DS↗

arXiv2019

Stochastic Load Balancing on Unrelated Machines

We consider the problem of makespan minimization on unrelated machines when job sizes are stochastic. The goal is to find a fixed assignment of jobs to machines, to minimize the expected value of the maximum load over all the machines. For the identical machines special case when the size of a job is the same across all machines, a constant-factor approximation algorithm has long been known. Our main result is the first constant-factor approximation algorithm for the general case of unrelated machines. This is achieved by (i) formulating a lower bound using an exponential-size linear program that is efficiently computable, and (ii) rounding this linear program while satisfying only a specific subset of the constraints that still suffice to bound the expected makespan. We also consider two generalizations. The first is the budgeted makespan minimization problem, where the goal is to minimize the expected makespan subject to scheduling a target number (or reward) of jobs. We extend our main result to obtain a constant-factor approximation algorithm for this problem. The second problem involves $q$-norm objectives, where we want to minimize the expected q-norm of the machine loads. Here we give an $O(q/\log q)$-approximation algorithm, which is a constant-factor approximation for any fixed $q$.

cs.DS↗

arXiv2019

A multi-wavelength analysis of a collection of short-duration GRBs observed between 2012-2015

We investigate the prompt emission and the afterglow properties of short duration gamma-ray burst (sGRB) 130603B and another eight sGRB events during 2012-2015, observed by several multi-wavelength facilities including the GTC 10.4m telescope. Prompt emission high energy data of the events were obtained by INTEGRAL/SPI/ACS, Swift/BAT and Fermi/GBM satellites. The prompt emission data by INTEGRAL in the energy range of 0.1-10 MeV for sGRB 130603B, sGRB 140606A, sGRB 140930B, sGRB 141212A and sGRB 151228A do not show any signature of the extended emission or precursor activity and their spectral and temporal properties are similar to those seen in case of other short bursts. For sGRB130603B, our new afterglow photometric data constraints the pre jet-break temporal decay due to denser temporal coverage. For sGRB 130603B, the afterglow light curve, containing both our new as well as previously published photometric data is broadly consistent with the ISM afterglow model. Modeling of the host galaxies of sGRB 130603B and sGRB 141212A using the LePHARE software supports a scenario in which the environment of the burst is undergoing moderate star formation activity. From the inclusion of our late-time data for 8 other sGRBs we are able to; place tight constraints on the non-detection of the afterglow, host galaxy or any underlying kilonova emission. Our late-time afterglow observations of the sGRB 170817A/GW170817 are also discussed and compared with the sub-set of sGRBs.

astro-ph.HE↗

arXiv2019

VEDAR: Accountable Behavioural Change Detection

With exponential increase in the availability oftelemetry / streaming / real-time data, understanding contextualbehavior changes is a vital functionality in order to deliverunrivalled customer experience and build high performance andhigh availability systems. Real-time behavior change detectionfinds a use case in number of domains such as social networks,network traffic monitoring, ad exchange metrics etc. In streamingdata, behavior change is an implausible observation that does notfit in with the distribution of rest of the data. A timely and preciserevelation of such behavior changes can give us substantialinformation about the system in critical situations which can bea driving factor for vital decisions. Detecting behavior changes instreaming fashion is a difficult task as the system needs to processhigh speed real-time data and continuously learn from data alongwith detecting anomalies in a single pass of data. In this paperwe introduce a novel algorithm called Accountable BehaviorChange Detection (VEDAR) which can detect and elucidate thebehavior changes in real-time and operates in a fashion similarto human perception. We have bench marked our algorithmon open source anomaly detection datasets. We have benchmarked our algorithm by comparing its performance on opensource anomaly datasets against industry standard algorithmslike Numenta HTM and Twitter AdVec (SH-ESD). Our algorithmoutperforms above mentioned algorithms for behaviour changedetection, efficacy is given in section V.

cs.SI↗

arXiv2019

First 4D lattice calculation of transport coefficient $\hat{q}$ for pure gluon plasma

The transport coefficient $\hat{q}$ plays a pivotal role in describing the phenomenon of jet quenching in the quark-gluon plasma (QGP) produced in ultra-relativistic nucleus-nucleus collisions. It is challenging to compute this coefficient from first principles due to its non-perturbative nature. In this article, we present an $ab$-$initio$ formulation of $\hat{q}$ based on the standard techniques of perturbative quantum chromodynamics (pQCD) and lattice gauge theory. We construct $\hat{q}$ by considering a leading order (LO) process where a hard parton produced from the hard scattering undergoes transverse broadening due to scatterings with the thermal medium. We do an analytic continuation to the Euclidean region and use the dispersion relation to express $\hat{q}$ in terms of series of local Field-Strength-Field-Strength (FF) operators. Each term in the series is suppressed by the hard scale $q^{-}$. Finally, we compute the local operators on the quenched SU(3) lattice and present our estimates for $\hat{q}$.

nucl-th↗

arXiv2018

First calculation of $\hat{q}$ on a quenched SU(3) plasma

The jet transport coefficient $\hat{q}$ is the leading transport coefficient that controls the modification of hard jets produced in heavy-ion collisions. This coefficient is inherently non-perturbative, and hence, is challenging to compute from first principles. In this report, we present a perturbative quantum chromodynamics (pQCD) and lattice gauge theory based formulation to study $\hat{q}$. We formulate $\hat{q}$ within a 4-dimensional (4D) quenched SU(3) lattice. We consider a leading order diagram for a hard parton passing through the quark-gluon plasma. The non-perturbative part is expressed in terms of a non-local (two-point) Field-Strength-Field-Strength (FF) operator product which can be Taylor expanded after analytic continuation to the Euclidean region. Such an expansion allows us to write $\hat{q}$ in terms of the expectation of local operators. Finally, we present our results for $\hat{q}$ in a pure gluon plasma.

nucl-th↗

arXiv2018

Constant Factor Approximation Algorithm for Weighted Flow Time on a Single Machine in Pseudo-polynomial time

In the weighted flow-time problem on a single machine, we are given a set of n jobs, where each job has a processing requirement p_j, release date r_j and weight w_j. The goal is to find a preemptive schedule which minimizes the sum of weighted flow-time of jobs, where the flow-time of a job is the difference between its completion time and its released date. We give the first pseudo-polynomial time constant approximation algorithm for this problem. The running time of our algorithm is polynomial in n, the number of jobs, and P, which is the ratio of the largest to the smallest processing requirement of a job. Our algorithm relies on a novel reduction of this problem to a generalization of the multi-cut problem on trees, which we call the Demand Multi-Cut problem. Even though we do not give a constant factor approximation algorithm for the Demand Multi-Cut problem on trees, we show that the specific instances of Demand Multi-Cut obtained by reduction from weighted flow-time problem instances have more structure in them, and we are able to employ techniques based on dynamic programming. Our dynamic programming algorithm relies on showing that there are near optimal solutions which have nice smoothness properties, and we exploit these properties to reduce the size of DP table.

cs.DS↗

arXiv2018

Self Healing Interconnects with a Near Plastically Stretchable Heal

Flexible electronic systems such as roll up displays, wearable devices etc. promise exciting possibilities that could change the way humans interact with the environment. However, they suffer from poor reliability of interconnects and devices. Interconnects on flex are prone to open circuit failures due to mechanical stress, electrostatic discharge and environmental degradation. Passive approaches such as the use of stretchable conductors and novel geometries improve their response to mechanical stress but cannot salvage the interconnect if a fault were to occur. Active approaches using self healing techniques can repair a fault and have been demonstrated using methods that either use relatively rare materials, change conventional interconnect fabrication processes, only address faults due to mechanical stress or do not permit stretching. In this work we discuss a self healing technique that overcomes these limitations and demonstrate heals having metallic conductivity and nearly plastic stretchability. This is achieved using a dispersion of conductive particles in an insulating fluid encapsulated over the interconnect. Healing is automatically triggered by the electric field appearing in the open gap of a failed interconnect, irrespective of the cause of failure. The field polarizes the conductive particles causing them aggregate and chain up to bridge the gap and repair the fault. Using copper-silicone oil dispersions, we show self healing interconnects with the stretchable heal having conductivity of about $5 \times 10^{5}$ Sm and allowing strains from 12 to 60. Previously, stretchable interconnects used materials other than copper. Here we effectively show self healing, stretchable copper. This work promises high speed, self healing and stretchable interconnects on flex thereby improving system reliability.

cond-mat.soft↗