arXiv subjects

Amit Sethi

Publications and source records attributed to Amit Sethi.

At least 73 records · Page 4Linked to original sources

arXiv2024

EDSNet: Efficient-DSNet for Video Summarization

Current video summarization methods largely rely on transformer-based architectures, which, due to their quadratic complexity, require substantial computational resources. In this work, we address these inefficiencies by enhancing the Direct-to-Summarize Network (DSNet) with more resource-efficient token mixing mechanisms. We show that replacing traditional attention with alternatives like Fourier, Wavelet transforms, and Nyströmformer improves efficiency and performance. Furthermore, we explore various pooling strategies within the Regional Proposal Network, including ROI pooling, Fast Fourier Transform pooling, and flat pooling. Our experimental results on TVSum and SumMe datasets demonstrate that these modifications significantly reduce computational costs while maintaining competitive summarization performance. Thus, our work offers a more scalable solution for video summarization tasks.

cs.CV↗

arXiv2024

Few-Shot Histopathology Image Classification: Evaluating State-of-the-Art Methods and Unveiling Performance Insights

This paper presents a study on few-shot classification in the context of histopathology images. While few-shot learning has been studied for natural image classification, its application to histopathology is relatively unexplored. Given the scarcity of labeled data in medical imaging and the inherent challenges posed by diverse tissue types and data preparation techniques, this research evaluates the performance of state-of-the-art few-shot learning methods for various scenarios on histology data. We have considered four histopathology datasets for few-shot histopathology image classification and have evaluated 5-way 1-shot, 5-way 5-shot and 5-way 10-shot scenarios with a set of state-of-the-art classification techniques. The best methods have surpassed an accuracy of 70%, 80% and 85% in the cases of 5-way 1-shot, 5-way 5-shot and 5-way 10-shot cases, respectively. We found that for histology images popular meta-learning approaches is at par with standard fine-tuning and regularization methods. Our experiments underscore the challenges of working with images from different domains and underscore the significance of unbiased and focused evaluations in advancing computer vision techniques for specialized domains, such as histology images.

cs.CV↗

arXiv2024

The Brain Tumor Sequence Registration (BraTS-Reg) Challenge: Establishing Correspondence Between Pre-Operative and Follow-up MRI Scans of Diffuse Glioma Patients

Registration of longitudinal brain MRI scans containing pathologies is challenging due to dramatic changes in tissue appearance. Although there has been progress in developing general-purpose medical image registration techniques, they have not yet attained the requisite precision and reliability for this task, highlighting its inherent complexity. Here we describe the Brain Tumor Sequence Registration (BraTS-Reg) challenge, as the first public benchmark environment for deformable registration algorithms focusing on estimating correspondences between pre-operative and follow-up scans of the same patient diagnosed with a diffuse brain glioma. The BraTS-Reg data comprise de-identified multi-institutional multi-parametric MRI (mpMRI) scans, curated for size and resolution according to a canonical anatomical template, and divided into training, validation, and testing sets. Clinical experts annotated ground truth (GT) landmark points of anatomical locations distinct across the temporal domain. Quantitative evaluation and ranking were based on the Median Euclidean Error (MEE), Robustness, and the determinant of the Jacobian of the displacement field. The top-ranked methodologies yielded similar performance across all evaluation metrics and shared several methodological commonalities, including pre-alignment, deep neural networks, inverse consistency analysis, and test-time instance optimization per-case basis as a post-processing step. The top-ranked method attained the MEE at or below that of the inter-rater variability for approximately 60% of the evaluated landmarks, underscoring the scope for further accuracy and robustness improvements, especially relative to human experts. The aim of BraTS-Reg is to continue to serve as an active resource for research, with the data and online evaluation tools accessible at https://bratsreg.github.io/.

eess.IV↗

arXiv2024

WaveMix: A Resource-efficient Neural Network for Image Analysis

We propose a novel neural architecture for computer vision -- WaveMix -- that is resource-efficient and yet generalizable and scalable. While using fewer trainable parameters, GPU RAM, and computations, WaveMix networks achieve comparable or better accuracy than the state-of-the-art convolutional neural networks, vision transformers, and token mixers for several tasks. This efficiency can translate to savings in time, cost, and energy. To achieve these gains we used multi-level two-dimensional discrete wavelet transform (2D-DWT) in WaveMix blocks, which has the following advantages: (1) It reorganizes spatial information based on three strong image priors -- scale-invariance, shift-invariance, and sparseness of edges -- (2) in a lossless manner without adding parameters, (3) while also reducing the spatial sizes of feature maps, which reduces the memory and time required for forward and backward passes, and (4) expanding the receptive field faster than convolutions do. The whole architecture is a stack of self-similar and resolution-preserving WaveMix blocks, which allows architectural flexibility for various tasks and levels of resource availability. WaveMix establishes new benchmarks for segmentation on Cityscapes; and for classification on Galaxy 10 DECals, Places-365, five EMNIST datasets, and iNAT-mini and performs competitively on other benchmarks. Our code and trained models are publicly available.

cs.CV↗

arXiv2024

IFSENet : Harnessing Sparse Iterations for Interactive Few-shot Segmentation Excellence

Training a computer vision system to segment a novel class typically requires collecting and painstakingly annotating lots of images with objects from that class. Few-shot segmentation techniques reduce the required number of images to learn to segment a new class, but careful annotations of object boundaries are still required. On the other hand, interactive segmentation techniques only focus on incrementally improving the segmentation of one object at a time (typically, using clicks given by an expert) in a class-agnostic manner. We combine the two concepts to drastically reduce the effort required to train segmentation models for novel classes. Instead of trivially feeding interactive segmentation masks as ground truth to a few-shot segmentation model, we propose IFSENet, which can accept sparse supervision on a single or few support images in the form of clicks to generate masks on support (training, at least clicked upon once) as well as query (test, never clicked upon) images. To trade-off effort for accuracy flexibly, the number of images and clicks can be incrementally added to the support set to further improve the segmentation of support as well as query images. The proposed model approaches the accuracy of previous state-of-the-art few-shot segmentation models with considerably lower annotation effort (clicks instead of maps), when tested on Pascal and SBD datasets on query images. It also works well as an interactive segmentation method on support images.

cs.CV↗

arXiv2024

Advancing Gene Selection in Oncology: A Fusion of Deep Learning and Sparsity for Precision Gene Selection

Gene selection plays a pivotal role in oncology research for improving outcome prediction accuracy and facilitating cost-effective genomic profiling for cancer patients. This paper introduces two gene selection strategies for deep learning-based survival prediction models. The first strategy uses a sparsity-inducing method while the second one uses importance based gene selection for identifying relevant genes. Our overall approach leverages the power of deep learning to model complex biological data structures, while sparsity-inducing methods ensure the selection process focuses on the most informative genes, minimizing noise and redundancy. Through comprehensive experimentation on diverse genomic and survival datasets, we demonstrate that our strategy not only identifies gene signatures with high predictive power for survival outcomes but can also streamlines the process for low-cost genomic profiling. The implications of this research are profound as it offers a scalable and effective tool for advancing personalized medicine and targeted cancer therapies. By pushing the boundaries of gene selection methodologies, our work contributes significantly to the ongoing efforts in cancer genomics, promising improved diagnostic and prognostic capabilities in clinical settings.

q-bio.GN↗

arXiv2024

Network Inversion of Binarised Neural Nets

While the deployment of neural networks, yielding impressive results, becomes more prevalent in various applications, their interpretability and understanding remain a critical challenge. Network inversion, a technique that aims to reconstruct the input space from the model's learned internal representations, plays a pivotal role in unraveling the black-box nature of input to output mappings in neural networks. In safety-critical scenarios, where model outputs may influence pivotal decisions, the integrity of the corresponding input space is paramount, necessitating the elimination of any extraneous "garbage" to ensure the trustworthiness of the network. Binarised Neural Networks (BNNs), characterized by binary weights and activations, offer computational efficiency and reduced memory requirements, making them suitable for resource-constrained environments. This paper introduces a novel approach to invert a trained BNN by encoding it into a CNF formula that captures the network's structure, allowing for both inference and inversion.

cs.LG↗

arXiv2023

Utilizing Radiomic Feature Analysis For Automated MRI Keypoint Detection: Enhancing Graph Applications

Graph neural networks (GNNs) present a promising alternative to CNNs and transformers in certain image processing applications due to their parameter-efficiency in modeling spatial relationships. Currently, a major area of research involves the converting non-graph input data for GNN-based models, notably in scenarios where the data originates from images. One approach involves converting images into nodes by identifying significant keypoints within them. Super-Retina, a semi-supervised technique, has been utilized for detecting keypoints in retinal images. However, its limitations lie in the dependency on a small initial set of ground truth keypoints, which is progressively expanded to detect more keypoints. Having encountered difficulties in detecting consistent initial keypoints in brain images using SIFT and LoFTR, we proposed a new approach: radiomic feature-based keypoint detection. Demonstrating the anatomical significance of the detected keypoints was achieved by showcasing their efficacy in improving registration processes guided by these keypoints. Subsequently, these keypoints were employed as the ground truth for the keypoint detection method (LK-SuperRetina). Furthermore, the study showcases the application of GNNs in image matching, highlighting their superior performance in terms of both the number of good matches and confidence scores. This research sets the stage for expanding GNN applications into various other applications, including but not limited to image classification, segmentation, and registration.

eess.IV↗

arXiv2023

Classification of Various Types of Damages in Honeycomb Composite Sandwich Structures using Guided Wave Structural Health Monitoring

Classification of damages in honeycomb composite sandwich structure (HCSS) is important to decide remedial actions. However, previous studies have only detected damages using deviations of monitoring signal from healthy (baseline) using a guided wave (GW) based structural health monitoring system. Classification between various types of damages has not been reported for challenging cases. We show that using careful feature engineering and machine learning it is possible to classify between various types of damages such as core crush (CC), high density core (HDC), lost film adhesive (LFA) and teflon release film (TRF). We believe that we are the first to report numerical models for four types of damages in HCSS, which is followed up with experimental validation. We found that two out of four damages affect the GW signal in a particularly similar manner. We extracted and evaluated multiple features from time as well as frequency domains, and also experimented with features relative to as baseline as well as those that were baseline-free. Using Pearson's correlation coefficient based filtering, redundant features were eliminated. Finally, using an optimal feature set determined using feature elimination, high accuracy was achieved with a random forest classifier on held-out signals. For evaluating performance of the proposed method for different damage sizes, we used simulated data obtained from extensive parametric studies and got an accuracy of 77.89%. Interpretability studies to determine importance of various features showed that features computed using the baseline signal prove more effective as compared to baseline-free features.

eess.SP↗

arXiv2023

Combining Datasets with Different Label Sets for Improved Nucleus Segmentation and Classification

Segmentation and classification of cell nuclei in histopathology images using deep neural networks (DNNs) can save pathologists' time for diagnosing various diseases, including cancers, by automating cell counting and morphometric assessments. It is now well-known that the accuracy of DNNs increases with the sizes of annotated datasets available for training. Although multiple datasets of histopathology images with nuclear annotations and class labels have been made publicly available, the set of class labels differ across these datasets. We propose a method to train DNNs for instance segmentation and classification on multiple datasets where the set of classes across the datasets are related but not the same. Specifically, our method is designed to utilize a coarse-to-fine class hierarchy, where the set of classes labeled and annotated in a dataset can be at any level of the hierarchy, as long as the classes are mutually exclusive. Within a dataset, the set of classes need not even be at the same level of the class hierarchy tree. Our results demonstrate that segmentation and classification metrics for the class set used by the test split of a dataset can improve by pre-training on another dataset that may even have a different set of classes due to the expansion of the training set enabled by our method. Furthermore, generalization to previously unseen datasets also improves by combining multiple other datasets with different sets of classes for training. The improvement is both qualitative and quantitative. The proposed method can be adapted for various loss functions, DNN architectures, and application domains.

cs.CV↗

arXiv2023

Domain-Adaptive Learning: Unsupervised Adaptation for Histology Images with Improved Loss Function Combination

This paper presents a novel approach for unsupervised domain adaptation (UDA) targeting H&E stained histology images. Existing adversarial domain adaptation methods may not effectively align different domains of multimodal distributions associated with classification problems. The objective is to enhance domain alignment and reduce domain shifts between these domains by leveraging their unique characteristics. Our approach proposes a novel loss function along with carefully selected existing loss functions tailored to address the challenges specific to histology images. This loss combination not only makes the model accurate and robust but also faster in terms of training convergence. We specifically focus on leveraging histology-specific features, such as tissue structure and cell morphology, to enhance adaptation performance in the histology domain. The proposed method is extensively evaluated in accuracy, robustness, and generalization, surpassing state-of-the-art techniques for histology images. We conducted extensive experiments on the FHIST dataset and the results show that our proposed method - Domain Adaptive Learning (DAL) significantly surpasses the ViT-based and CNN-based SoTA methods by 1.41% and 6.56% respectively.

cs.CV↗

arXiv2023

Transforming Breast Cancer Diagnosis: Towards Real-Time Ultrasound to Mammogram Conversion for Cost-Effective Diagnosis

Ultrasound (US) imaging is better suited for intraoperative settings because it is real-time and more portable than other imaging techniques, such as mammography. However, US images are characterized by lower spatial resolution noise-like artifacts. This research aims to address these limitations by providing surgeons with mammogram-like image quality in real-time from noisy US images. Unlike previous approaches for improving US image quality that aim to reduce artifacts by treating them as (speckle noise), we recognize their value as informative wave interference pattern (WIP). To achieve this, we utilize the Stride software to numerically solve the forward model, generating ultrasound images from mammograms images by solving wave-equations. Additionally, we leverage the power of domain adaptation to enhance the realism of the simulated ultrasound images. Then, we utilize generative adversarial networks (GANs) to tackle the inverse problem of generating mammogram-quality images from ultrasound images. The resultant images have considerably more discernible details than the original US images.

eess.IV↗

arXiv2023

Reverse Knowledge Distillation: Training a Large Model using a Small One for Retinal Image Matching on Limited Data

Retinal image matching plays a crucial role in monitoring disease progression and treatment response. However, datasets with matched keypoints between temporally separated pairs of images are not available in abundance to train transformer-based model. We propose a novel approach based on reverse knowledge distillation to train large models with limited data while preventing overfitting. Firstly, we propose architectural modifications to a CNN-based semi-supervised method called SuperRetina that help us improve its results on a publicly available dataset. Then, we train a computationally heavier model based on a vision transformer encoder using the lighter CNN-based model, which is counter-intuitive in the field knowledge-distillation research where training lighter models based on heavier ones is the norm. Surprisingly, such reverse knowledge distillation improves generalization even further. Our experiments suggest that high-dimensional fitting in representation space may prevent overfitting unlike training directly to match the final output. We also provide a public dataset with annotations for retinal image keypoint detection and matching to help the research community develop algorithms for retinal image applications.

cs.CV↗

arXiv2023

Heterogeneous graphs model spatial relationships between biological entities for breast cancer diagnosis

The heterogeneity of breast cancer presents considerable challenges for its early detection, prognosis, and treatment selection. Convolutional neural networks often neglect the spatial relationships within histopathological images, which can limit their accuracy. Graph neural networks (GNNs) offer a promising solution by coding the spatial relationships within images. Prior studies have investigated the modeling of histopathological images as cell and tissue graphs, but they have not fully tapped into the potential of extracting interrelationships between these biological entities. In this paper, we present a novel approach using a heterogeneous GNN that captures the spatial and hierarchical relations between cell and tissue graphs to enhance the extraction of useful information from histopathological images. We also compare the performance of a cross-attention-based network and a transformer architecture for modeling the intricate relationships within tissue and cell graphs. Our model demonstrates superior efficiency in terms of parameter count and achieves higher accuracy compared to the transformer-based state-of-the-art approach on three publicly available breast cancer datasets -- BRIGHT, BreakHis, and BACH.

cs.CV↗

arXiv2023

WavePaint: Resource-efficient Token-mixer for Self-supervised Inpainting

Image inpainting, which refers to the synthesis of missing regions in an image, can help restore occluded or degraded areas and also serve as a precursor task for self-supervision. The current state-of-the-art models for image inpainting are computationally heavy as they are based on transformer or CNN backbones that are trained in adversarial or diffusion settings. This paper diverges from vision transformers by using a computationally-efficient WaveMix-based fully convolutional architecture -- WavePaint. It uses a 2D-discrete wavelet transform (DWT) for spatial and multi-resolution token-mixing along with convolutional layers. The proposed model outperforms the current state-of-the-art models for image inpainting on reconstruction quality while also using less than half the parameter count and considerably lower training and evaluation times. Our model even outperforms current GAN-based architectures in CelebA-HQ dataset without using an adversarially trainable discriminator. Our work suggests that neural architectures that are modeled after natural image priors require fewer parameters and computations to achieve generalization comparable to transformers.

cs.CV↗

arXiv2023

WaveMixSR: A Resource-efficient Neural Network for Image Super-resolution

Image super-resolution research recently been dominated by transformer models which need higher computational resources than CNNs due to the quadratic complexity of self-attention. We propose a new neural network -- WaveMixSR -- for image super-resolution based on WaveMix architecture which uses a 2D-discrete wavelet transform for spatial token-mixing. Unlike transformer-based models, WaveMixSR does not unroll the image as a sequence of pixels/patches. It uses the inductive bias of convolutions along with the lossless token-mixing property of wavelet transform to achieve higher performance while requiring fewer resources and training data. We compare the performance of our network with other state-of-the-art methods for image super-resolution. Our experiments show that WaveMixSR achieves competitive performance in all datasets and reaches state-of-the-art performance in the BSD100 dataset on multiple super-resolution tasks. Our model is able to achieve this performance using less training data and computational resources while maintaining high parameter efficiency compared to current state-of-the-art models.

cs.CV↗

arXiv2023

The ACROBAT 2022 Challenge: Automatic Registration Of Breast Cancer Tissue

The alignment of tissue between histopathological whole-slide-images (WSI) is crucial for research and clinical applications. Advances in computing, deep learning, and availability of large WSI datasets have revolutionised WSI analysis. Therefore, the current state-of-the-art in WSI registration is unclear. To address this, we conducted the ACROBAT challenge, based on the largest WSI registration dataset to date, including 4,212 WSIs from 1,152 breast cancer patients. The challenge objective was to align WSIs of tissue that was stained with routine diagnostic immunohistochemistry to its H&E-stained counterpart. We compare the performance of eight WSI registration algorithms, including an investigation of the impact of different WSI properties and clinical covariates. We find that conceptually distinct WSI registration methods can lead to highly accurate registration performances and identify covariates that impact performances across methods. These results establish the current state-of-the-art in WSI registration and guide researchers in selecting and developing methods.

eess.IV↗

arXiv2023

CHATTY: Coupled Holistic Adversarial Transport Terms with Yield for Unsupervised Domain Adaptation

We propose a new technique called CHATTY: Coupled Holistic Adversarial Transport Terms with Yield for Unsupervised Domain Adaptation. Adversarial training is commonly used for learning domain-invariant representations by reversing the gradients from a domain discriminator head to train the feature extractor layers of a neural network. We propose significant modifications to the adversarial head, its training objective, and the classifier head. With the aim of reducing class confusion, we introduce a sub-network which displaces the classifier outputs of the source and target domain samples in a learnable manner. We control this movement using a novel transport loss that spreads class clusters away from each other and makes it easier for the classifier to find the decision boundaries for both the source and target domains. The results of adding this new loss to a careful selection of previously proposed losses leads to improvement in UDA results compared to the previous state-of-the-art methods on benchmark datasets. We show the importance of the proposed loss term using ablation studies and visualization of the movement of target domain sample in representation space.

cs.CV↗