arXiv subjects

André F. V. Matias

Publications and source records attributed to André F. V. Matias.

6 recordsLinked to original sources

arXiv2026

Shaping boundaries to control and transport topological defects in colloidal nematic liquid crystals

Anisotropic rod-like particles form liquid crystalline phases with varying degrees of orientational and translational order. When confined geometrically, these phases can give rise to topological defects, which can be selected and controlled by tuning how the rods align near boundaries, known as anchoring. While anchoring in molecular liquid crystals can be controlled through surface functionalization, this approach is not easily applicable to microscale colloidal systems, which have so far been limited to planar anchoring. Here, using particle-based simulations, Landau-de Gennes theory, and experiments on colloidal rods, we demonstrate that topographical patterning of the boundary can effectively control the anchoring type and, in turn, the defect state in two-dimensional confined nematics. Building on this, we numerically predict that dynamically shape-shifting the boundaries can transform and transport topological defects.

cond-mat.soft↗

arXiv2026

Dynamic bidirectional coupling of membrane morphology and rod organization in flexible vesicles

The ordering of rod-like particles in soft, deformable containers emerges from the interplay of anisotropic interactions, geometric confinement, and boundary compliance. This competition couples internal particle organization to container morphology, producing behavior distinct from both rigid confinement and bulk systems. Such coupling is also relevant to biological contexts in which filamentous structures are confined by deformable membranes. Using a minimal model combining experiments and simulations of colloidal rods encapsulated in lipid vesicles, we show that soft confinement drives a bidirectional coupling between internal order and vesicle shape. This interplay gives rise to a phase diagram in which elongated vesicles promote nematic alignment at lower packing fractions, whereas higher packing fractions induce smectic-like ordering that reshapes vesicles into plate-like morphologies with increased bending energy. Furthermore, by controlling vesicle volume and membrane area, we demonstrate that boundary conditions enable reversible tuning of both vesicle shape and internal rod organization. These results establish a framework for dynamically controlling colloidal self-assembly in soft containers and provide insight into the organization of anisotropic building blocks in deformable, cell-like, confinements.

cond-mat.soft↗

arXiv2026

Porosity and Material Disorder Drive Distinct Channelization Transition

Flow through porous media can reshape the medium through erosion and deposition, producing preferential flow channels across a wide range of natural and industrial systems. Yet the mechanisms by which spatial disorder triggers channelization remain unclear. Here we derive a continuum description for the coupled evolution of flow and porosity by coarse-graining pore-scale dynamics and validating the resulting model with pore-scale simulations. Using this framework, we show that different sources of disorder lead to qualitatively distinct behaviors. Disorder in erosion resistance produces a discontinuous transition to localized flow, with permanent channels appearing only above a finite disorder strength. In contrast, even extremely weak fluctuations in the initial porosity destabilize homogeneous flow and trigger persistent channelization. These results reveal an unexpected sensitivity of evolving porous media to structural heterogeneity, suggesting that channelization can arise generically even in nearly uniform materials.

physics.flu-dyn↗

arXiv2023

Continuum model for extraction and retention in porous media

Several natural and industrial processes involve the extraction or retention of a solute by a fluid invading a network of channels. Examples include aquifer contamination, chemical filtration, and coffee extraction. We propose a continuum equation to model these processes, parametrized by the Péclet number and the rate of mass transfer between the solid and the fluid. We study the time dependence of the extracted mass for different values of the parameter space. The continuum description is validated by combining extraction experiments with coffee and computational fluid dynamics. An analytical solution is derived for the limit of slow mass transfer, which is corroborated by numerical simulations.

physics.flu-dyn↗

arXiv2022

Cell response in free-packed granular systems

The study of the interactions of living adherent cells with mechanically stable (visco)elastic materials enables understanding and exploiting physiological phenomena mediated by cell-extracellular communication. However, insight on the interaction of cells and surrounding objects with different stability patterns upon cell contact might unveil cell responses that may be engineered for innovative applications. Here, it is hypothesized that the efficiency of cell attachment, spreading and movement across a free-packed granular bed of microparticles depend on microparticle diameter, raising the possibility of a necessary minimum traction force for the reinforcement of cell-particle bonds, and long-term cell adhesion. The results suggest that microparticles with 14-20 μm are prone to cell-mediated mobility, holding the potential of inducing early cell detachment, while objects with diameters from 38-85 μm enable long-lasting cell adhesion and proliferation. An in-silico hybrid particle-based model that addresses time-dependent biological mechanisms of cell adhesion is proposed, providing inspiration for engineering platforms to address healthcare-related challenges.

physics.bio-ph↗

arXiv2021

Flow through time-evolving porous media: swelling and erosion

The flow through a porous medium strongly depends on the boundary conditions, very often assumed to be static. Here, we consider changes in the medium due to swelling and erosion and extend existing Lattice-Boltzmann models to include both. We study two boundary conditions: a constant pressure drop and a constant flow rate. For a constant flow rate, the steady state depends solely on the erosion dynamics while for a constant pressure drop it depends also on the timescale of swelling. We analyze the competition between swelling and erosion and identify a transition between regimes where either swelling or erosion dominate.

physics.flu-dyn↗