arXiv subjects

Andrew Chan

Publications and source records attributed to Andrew Chan.

10 recordsLinked to original sources

arXiv2025

IsoDAR@Yemilab: Preliminary Design Report -- Volume II: Medium Energy Beam Transport, Neutrino Source, and Shielding

This Preliminary Design Report (PDR) describes the IsoDAR electron-antineutrino source in two volumes which are mostly site-independent and describe the cyclotron driver providing a 60 MeV, 10 mA proton beam (Volume I); and the medium energy beam transport line (MEBT) and target (this Volume). The IsoDAR driver and target will produce about $1.15\cdot10^{23}$ electron-antineutrinos over five calendar years. Paired with a kton-scale liquid scintillator detector, this will enable a broad particle physics program including searches for new symmetries, new interactions and new particles. Here in Volume II, we describe the medium energy beam transport line, the antineutrino source beam-target and surrounding sleeve, shielding, and plans for monitoring and installation.

hep-ex↗

arXiv2024

IsoDAR@Yemilab: Preliminary Design Report -- Volume I: Cyclotron Driver

This Preliminary Design Report (PDR) describes the IsoDAR electron-antineutrino source in two volumes which are mostly site-independent and describe the cyclotron driver providing a 60 MeV, 10 mA proton beam (this Volume); and the medium energy beam transport line (MEBT) and target (Volume II). The IsoDAR driver and target will produce about 1.15e23 electron-antineutrinos over five years. Paired with a kton-scale liquid scintillator detector, it will enable a broad particle physics program including searches for new symmetries, new interactions and new particles. Here in Volume I, we describe the driver, which includes the ion source, low energy beam transport, and cyclotron. The latter features Radio-Frequency Quadrupole (RFQ) direct axial injection and represents the first accelerator purpose-built to make use of so-called vortex motion.

physics.acc-ph↗

arXiv2024

Anytime, Anywhere, Anyone: Investigating the Feasibility of Segment Anything Model for Crowd-Sourcing Medical Image Annotations

Curating annotations for medical image segmentation is a labor-intensive and time-consuming task that requires domain expertise, resulting in "narrowly" focused deep learning (DL) models with limited translational utility. Recently, foundation models like the Segment Anything Model (SAM) have revolutionized semantic segmentation with exceptional zero-shot generalizability across various domains, including medical imaging, and hold a lot of promise for streamlining the annotation process. However, SAM has yet to be evaluated in a crowd-sourced setting to curate annotations for training 3D DL segmentation models. In this work, we explore the potential of SAM for crowd-sourcing "sparse" annotations from non-experts to generate "dense" segmentation masks for training 3D nnU-Net models, a state-of-the-art DL segmentation model. Our results indicate that while SAM-generated annotations exhibit high mean Dice scores compared to ground-truth annotations, nnU-Net models trained on SAM-generated annotations perform significantly worse than nnU-Net models trained on ground-truth annotations ($p<0.001$, all).

cs.CV↗

arXiv2024

Hidden in Plain Sight: Undetectable Adversarial Bias Attacks on Vulnerable Patient Populations

The proliferation of artificial intelligence (AI) in radiology has shed light on the risk of deep learning (DL) models exacerbating clinical biases towards vulnerable patient populations. While prior literature has focused on quantifying biases exhibited by trained DL models, demographically targeted adversarial bias attacks on DL models and its implication in the clinical environment remains an underexplored field of research in medical imaging. In this work, we demonstrate that demographically targeted label poisoning attacks can introduce undetectable underdiagnosis bias in DL models. Our results across multiple performance metrics and demographic groups like sex, age, and their intersectional subgroups show that adversarial bias attacks demonstrate high-selectivity for bias in the targeted group by degrading group model performance without impacting overall model performance. Furthermore, our results indicate that adversarial bias attacks result in biased DL models that propagate prediction bias even when evaluated with external datasets.

cs.LG↗

arXiv2021

Non-collinear and strongly asymmetric polar moments at back-gated SrTiO3 interfaces

The highly mobile electrons at the interface of SrTiO3 with other oxide insulators, such as LaAlO3 or AlOx, are of great current interest. A vertical gate voltage allows controlling a metal/superconductor-to-insulator transition, as well as electrical modulation of the spin-orbit Rashba coupling for spin-charge conversion. These findings raise important questions about the origin of the confined electrons as well as the mechanisms that govern the interfacial electric field. Here we use infrared ellipsometry and confocal Raman spectroscopy to show that an anomalous polar moment is induced at the interface that is non-collinear, highly asymmetric and hysteretic with respect to the vertical gate electric field. Our data indicate that an important role is played by the electromigration of oxygen vacancies and their clustering at the antiferrodistortive domain boundaries of SrTiO3, which generates local electric and possibly also flexoelectric fields and subsequent polar moments with a large lateral component. Our results open new perspectives for the defect engineering of lateral devices with strongly enhanced and hysteretic local electric fields that can be manipulated with various other parameters, like strain, temperature, or photons.

cond-mat.mtrl-sci↗

arXiv2021

DEWPython: A Python Implementation of the Deep Earth Water Model and Application to Ocean Worlds

There are two main methods of calculating the thermodynamic properties of water and solutes: mass action (including the Helgeson-Kirkham-Flowers (HKF) equations of state and model) and Gibbs free energy minimization (e.g. Leal et al., 2016). However, in certain regions of pressure and temperature the HKF model inaccurately predicts the speciation and concentration of solutes (e.g. Miron et al., 2019). The Deep Earth Water (DEW) model uses a series of HKF-type equations to calculate the properties of water and solute concentrations at high temperatures (373 - 1473 K) and pressures (0.1 - 6 GPa) (e.g. Huang and Sverjensky, 2019; Pan et al., 2013; Sverjensky et al., 2014). The DEW model is synthesized in an Excel spreadsheet and calculates Gibbs energies of formation, equilibrium constants, and standard volume changes for reactions. Here we present an object-oriented Python implementation of the DEW model, called DEWPython. Our model expands on DEW by increasing model efficiency, streamlining the input process, and incorporating SUPCRT in-line. Additionally, our model builds in minerals and aqueous species from the thermodynamic database slop16.dat (Boyer, 2019) which would normally be calculated separately. We also present a set of reactions relevant to icy ocean world interiors calculated with the DEWPython. The favorability of these reactions indicates likely formation of certain organic species under extreme pressures relevant to ocean worlds.

physics.geo-ph↗

arXiv2019

Scheduling Algorithms for Efficient Execution of Stream Workflow Applications in Multicloud Environments

Big data processing applications are becoming more and more complex. They are no more monolithic in nature but instead they are composed of decoupled analytical processes in the form of a workflow. One type of such workflow applications is stream workflow application, which integrates multiple streaming big data applications to support decision making. Each analytical component of these applications runs continuously and processes data streams whose velocity will depend on several factors such as network bandwidth and processing rate of parent analytical component. As a consequence, the execution of these applications on cloud environments requires advanced scheduling techniques that adhere to end user's requirements in terms of data processing and deadline for decision making. In this paper, we propose two Multicloud scheduling and resource allocation techniques for efficient execution of stream workflow applications on Multicloud environments while adhering to workflow application and user performance requirements and reducing execution cost. Results showed that the proposed genetic algorithm is an adequate and effective for all experiments.

cs.DC↗

arXiv2019

Automatic detection of lesion load change in Multiple Sclerosis using convolutional neural networks with segmentation confidence

The detection of new or enlarged white-matter lesions in multiple sclerosis is a vital task in the monitoring of patients undergoing disease-modifying treatment for multiple sclerosis. However, the definition of 'new or enlarged' is not fixed, and it is known that lesion-counting is highly subjective, with high degree of inter- and intra-rater variability. Automated methods for lesion quantification hold the potential to make the detection of new and enlarged lesions consistent and repeatable. However, the majority of lesion segmentation algorithms are not evaluated for their ability to separate progressive from stable patients, despite this being a pressing clinical use-case. In this paper we show that change in volumetric measurements of lesion load alone is not a good method for performing this separation, even for highly performing segmentation methods. Instead, we propose a method for identifying lesion changes of high certainty, and establish on a dataset of longitudinal multiple sclerosis cases that this method is able to separate progressive from stable timepoints with a very high level of discrimination (AUC = 0.99), while changes in lesion volume are much less able to perform this separation (AUC = 0.71). Validation of the method on a second external dataset confirms that the method is able to generalize beyond the setting in which it was trained, achieving an accuracy of 83% in separating stable and progressive timepoints. Both lesion volume and count have previously been shown to be strong predictors of disease course across a population. However, we demonstrate that for individual patients, changes in these measures are not an adequate means of establishing no evidence of disease activity. Meanwhile, directly detecting tissue which changes, with high confidence, from non-lesion to lesion is a feasible methodology for identifying radiologically active patients.

cs.CV↗

arXiv2019

Simultaneous lesion and neuroanatomy segmentation in Multiple Sclerosis using deep neural networks

Segmentation of white matter lesions and deep grey matter structures is an important task in the quantification of magnetic resonance imaging in multiple sclerosis. In this paper we explore segmentation solutions based on convolutional neural networks (CNNs) for providing fast, reliable segmentations of lesions and grey-matter structures in multi-modal MR imaging, and the performance of these methods when applied to out-of-centre data. We trained two state-of-the-art fully convolutional CNN architectures on the 2016 MSSEG training dataset, which was annotated by seven independent human raters: a reference implementation of a 3D Unet, and a more recently proposed 3D-to-2D architecture (DeepSCAN). We then retrained those methods on a larger dataset from a single centre, with and without labels for other brain structures. We quantified changes in performance owing to dataset shift, and changes in performance by adding the additional brain-structure labels. We also compared performance with freely available reference methods. Both fully-convolutional CNN methods substantially outperform other approaches in the literature when trained and evaluated in cross-validation on the MSSEG dataset, showing agreement with human raters in the range of human inter-rater variability. Both architectures showed drops in performance when trained on single-centre data and tested on the MSSEG dataset. When trained with the addition of weak anatomical labels derived from Freesurfer, the performance of the 3D Unet degraded, while the performance of the DeepSCAN net improved. Overall, the DeepSCAN network predicting both lesion and anatomical labels was the best-performing network examined.

cs.CV↗

arXiv2018

Fog Computing Architecture: Survey and Challenges

Emerging technologies that generate a huge amount of data such as the Internet of Things (IoT) services need latency aware computing platforms to support time-critical applications. Due to the on-demand services and scalability features of cloud computing, Big Data application processing is done in the cloud infrastructure. Managing Big Data applications exclusively in the cloud is not an efficient solution for latency-sensitive applications related to smart transportation systems, healthcare solutions, emergency response systems and content delivery applications. Thus, the Fog computing paradigm that allows applications to perform computing operations in-between the cloud and the end devices has emerged. In Fog architecture, IoT devices and sensors are connected to the Fog devices which are located in close proximity to the users and it is also responsible for intermediate computation and storage. Most computations will be done on the edge by eliminating full dependencies on the cloud resources. In this chapter, we investigate and survey Fog computing architectures which have been proposed over the past few years. Moreover, we study the requirements of IoT applications and platforms, and the limitations faced by cloud systems when executing IoT applications. Finally, we review current research works that particularly focus on Big Data application execution on Fog and address several open challenges as well as future research directions.

cs.DC↗